BOL: Rahul Nayak's wire posts

Wire post by Rahul Nayak

Rahul Nayak — Mon, 20 Aug 2018 05:35:08 -0500

https://scinapse.io/ #Non-profit #academic #search #engine

Wire post by Rahul Nayak

Rahul Nayak — Mon, 06 Aug 2018 10:14:26 -0500

Understanding PairedEnd(PE) mapping https://davetang.org/muse/2014/07/24/getting-started-paired-end-reads/ #PE #Paired #End #PairedEnd #Mapping #Map #Learn

Wire post by Rahul Nayak

Rahul Nayak — Mon, 06 Aug 2018 07:52:55 -0500

du -sh * | sort | grep "G" #List size of all the directory #Size #List #Directory #Linux

Wire post by Rahul Nayak

Rahul Nayak — Fri, 13 Jul 2018 19:53:52 -0500

Useful #tools for #genome analysis https://gigascience.biomedcentral.com/articles/10.1186/s13742-015-0077-2

Wire post by Rahul Nayak

Rahul Nayak — Tue, 03 Jul 2018 05:01:20 -0500

Transcriptome assembly https://www.rna-seqblog.com/tag/transcriptome-assembly/ #RNA-seq #Transcriptome #Assembly

Wire post by Rahul Nayak

Rahul Nayak — Wed, 27 Jun 2018 18:50:42 -0500

Get unique ids from column 1 in Linux. $ cat output_file | cut -f 1 | sort | uniq > allUniqOUT #Unique #Linux #Cut

Wire post by Rahul Nayak

Rahul Nayak — Mon, 25 Jun 2018 08:36:09 -0500

Genome in a Bottle http://jimb.stanford.edu/giab/ #GIAB #Genome

Wire post by Rahul Nayak

Rahul Nayak — Tue, 29 May 2018 07:41:51 -0500

PacBio Sequencing and Its Applications https://www.sciencedirect.com/science/article/pii/S1672022915001345 #PacBio #Application #NGS

Wire post by Rahul Nayak

Rahul Nayak — Tue, 10 Apr 2018 04:15:23 -0500

#Bioinformatics #scripts links http://enve-omics.ce.gatech.edu/enveomics/docs

Wire post by Rahul Nayak

Rahul Nayak — Tue, 10 Apr 2018 04:06:14 -0500

#Split #multifasta $ cat hg18.fa | awk '{
if (substr($0, 1, 1)==">") {filename=(substr($0,2) ".fa")}
print $0 > filename
}'

Wire post by Rahul Nayak

Rahul Nayak — Wed, 28 Mar 2018 17:14:25 -0500

#Extract all the files from a #directory and #sub-dir with #pattern. $ find TrimmedDir -type f | grep "L_" | xargs -i cp {} .

Wire post by Rahul Nayak

Rahul Nayak — Fri, 23 Mar 2018 10:18:22 -0500

#Convert #fasta file to uppercase/lowercase, without altering the annotation line $ awk '{ if ($0 !~ />/) {print toupper($0)} else {print $0} }' name.fasta

Wire post by Rahul Nayak

Rahul Nayak — Sun, 18 Mar 2018 17:30:51 -0500

#Ramalingam #fellowship http://www.dbtindia.nic.in/wp-content/uploads/RAMA-ADvertisement14032018.pdf #RAMA #Back2India

Wire post by Rahul Nayak

Rahul Nayak — Wed, 14 Mar 2018 10:31:04 -0500

Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed #Bed #Extract #Sequence #bedtools

Wire post by Rahul Nayak

Rahul Nayak — Tue, 06 Mar 2018 04:23:16 -0600

Bioinformatics job opening at NIB, Noida http://nib.gov.in/career/advertsisement.pdf #Job #NIB #Noida