BOL: Rahul Nayak's wire posts

Wire post by Rahul Nayak

Rahul Nayak — Tue, 06 Mar 2018 03:04:15 -0600

Ten steps to get started in #Genome #Assembly and #Annotation https://f1000research.com/articles/7-148/v1

Wire post by Rahul Nayak

Rahul Nayak — Tue, 06 Feb 2018 06:59:07 -0600

Bioinformatics resources https://github.com/danielecook/Awesome-Bioinformatics #Bioinformatics #Resources

Wire post by Rahul Nayak

Rahul Nayak — Tue, 16 Jan 2018 23:52:50 -0600

Assessing an effective undergraduate module #teaching applied #bioinformatics to biology students http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005872

Wire post by Rahul Nayak

Rahul Nayak — Thu, 28 Dec 2017 09:48:52 -0600

Bioinformatics tools collection and database https://bio.tools #tools #database #search #list

Wire post by Rahul Nayak

Rahul Nayak — Sun, 10 Dec 2017 06:28:26 -0600

Marginal plot in R https://stackoverflow.com/questions/8545035/scatterplot-with-marginal-histograms-in-ggplot2 #R #Plot #Marginal

Wire post by Rahul Nayak

Rahul Nayak — Sat, 25 Nov 2017 05:20:44 -0600

Random forest algorithms http://blog.yhat.com/posts/random-forests-in-python.html #forest #random #algo

Wire post by Rahul Nayak

Rahul Nayak — Tue, 08 Aug 2017 17:14:03 -0500

Toy example comparing several MSA algorithms http://wiki.bits.vib.be/index.php/Multiple_sequence_alignment #Alignment #MSA #Algorithms

Wire post by Rahul Nayak

Rahul Nayak — Wed, 19 Jul 2017 08:26:23 -0500

Remove "|" from fasta header. $ sed 's,|,_,g' -i file.fa #fasta #header #sed

Wire post by Rahul Nayak

Rahul Nayak — Wed, 19 Jul 2017 08:22:57 -0500

Remove unwanted character from fasta file. sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa #fasta #file #header #charater

Wire post by Rahul Nayak

Rahul Nayak — Wed, 19 Jul 2017 08:09:54 -0500

Evolution and phylogeny software http://tree.bio.ed.ac.uk/software/ #tools #software #phylogeny #evolution

Wire post by Rahul Nayak

Rahul Nayak — Fri, 30 Jun 2017 04:12:21 -0500

You can use the df command to know the free space in the disk: $ df -h . #df #Linux #List #Free #Space

Wire post by Rahul Nayak

Rahul Nayak — Fri, 30 Jun 2017 04:11:21 -0500

To know the size of the directory in current folder. $ du -sh * #Size #Directory #List #Space #Linux #du

Wire post by Rahul Nayak

Rahul Nayak — Fri, 23 Jun 2017 05:06:43 -0500

Count the number of bases in fasta file. grep -v ">" file.fasta | wc | awk '{print $3-$1}' #Fasta #Count #Bases

Wire post by Rahul Nayak

Rahul Nayak — Thu, 08 Jun 2017 09:12:07 -0500

Convert masked genome to N letters. $ perl -pe '/^[^>]/ and $_=~ s/[a-z]/N/g' genomic.fna > genomic.N-masked.fna #Genome #Masked #N #Convert

Wire post by Rahul Nayak

Rahul Nayak — Thu, 08 Jun 2017 09:10:37 -0500

Unmasking the lower case values in genome. $ perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna #Genome #Unmask #Perl #Oneliner