BOL: Shruti Paniwala's wire posts

Wire post by Shruti Paniwala

Shruti Paniwala — Thu, 15 Sep 2016 11:15:56 -0500

Rename the fasta name perl -ane 'if(/\>/){$a++; @foo = split /\s+/;$_ = join '_', @foo; print "$_\n"}else{print;}' your.fasta > new.fa #PerlTrick #PerlOneliner #Perl

Wire post by Shruti Paniwala

Shruti Paniwala — Wed, 07 Sep 2016 03:23:36 -0500

Little correction, I guess you mean concatenate many files: $ for a in *.txt ; do cat $a >> newFile ; done #Linux #Tricks

Wire post by Shruti Paniwala

Shruti Paniwala — Wed, 24 Aug 2016 05:30:23 -0500

Genome basic stats http://www.cbs.dtu.dk/courses/genomics_course/Day3.pdf #Genome #Stats #Plot #R

Wire post by Shruti Paniwala

Shruti Paniwala — Wed, 17 Aug 2016 03:01:41 -0500

Determine your current Java version in Linux OS: java -Xmx90m -version #Java #Linux #Version

Wire post by Shruti Paniwala

Shruti Paniwala — Thu, 23 Jun 2016 09:00:18 -0500

#Extract #tabbed info from #BAM file with samtools: samtools view test.bam|awk '{print $1 "\t" $2 "\t" $3 "\t" $4 "\t" $4+length($10)-1}' > file.xls

Wire post by Shruti Paniwala

Shruti Paniwala — Wed, 15 Jun 2016 05:18:40 -0500

Grep all the processor in Linux system $ grep "^processor" /proc/cpuinfo | tail -n 1 | awk '{print $3}' #Grep #OS #Linux #Processor

Wire post by Shruti Paniwala

Shruti Paniwala — Wed, 15 Jun 2016 05:16:04 -0500

Update NCBI BLAST database in your local Linux system $ update_blastdb --passive --decompress nr nt #BLAST #Updates #NT #NR #Linux

Wire post by Shruti Paniwala

Shruti Paniwala — Tue, 29 Dec 2015 01:25:07 -0600

#Professor #Jobs at #University of #North #Bengal http://www.nbu.ac.in/Fresh_Vacancies_in_teaching_posts%281%29.pdf #Teaching #Faculty

Wire post by Shruti Paniwala

Shruti Paniwala — Wed, 23 Dec 2015 05:09:30 -0600

13 PhD positions : #Cologne, #Germany http://www.nature.com/naturejobs/science/jobs/557351-13-phd-positions

Wire post by Shruti Paniwala

Shruti Paniwala — Thu, 10 Sep 2015 16:23:29 -0500

Bioinformatics studentship and traineeship at Gargi collage http://gargi.du.ac.in/uploads/ngrey/News/Gargi_Advt_BIF_2015.pdf #Studentship #Traineeship #Gargi #Delhi #Bioinformatics

Wire post by Shruti Paniwala

Shruti Paniwala — Fri, 17 Jul 2015 19:44:31 -0500

RA Bioinformatics at #ACBR #NewDelhi http://www.acbrdu.edu/pdf/15072015_Advt.pdf #WalkIn #Bioinformatics #Opportunity

Wire post by Shruti Paniwala

Shruti Paniwala — Thu, 08 Jan 2015 23:11:42 -0600

What Makes a Protein Sequence a Prion? http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004013 #Protein

Wire post by Shruti Paniwala

Shruti Paniwala — Thu, 08 Jan 2015 23:05:59 -0600

Advancements and Challenges in Computational Biologyhttp://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004053

Wire post by Shruti Paniwala

Shruti Paniwala — Wed, 20 Aug 2014 02:13:08 -0500

AliView: a fast and lightweight alignment viewer and editor for large data sets. http://bioinformatics.oxfordjournals.org/content/early/2014/08/05/bioinformatics.btu531.short #AliView

Wire post by Shruti Paniwala

Shruti Paniwala — Wed, 20 Aug 2014 02:10:37 -0500

googleVis 0.5.5 released http://www.r-bloggers.com/googlevis-0-5-5-released/ #GoogleVis #R