BOL: Wire posts tagged with 'Assembly'

Wire post by Abhi

Abhi — Tue, 16 Nov 2021 01:06:24 -0600

Tools for building de novo transcriptome assembly https://www.sciencedirect.com/science/article/pii/S2214662817301032 #Trnscripttomics #Assembly

Wire post by LEGE

LEGE — Thu, 16 Sep 2021 06:06:32 -0500

Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer https://www.cell.com/cell-systems/fulltext/S2405-4712(21)00332-X #msDBG #Assembly #Genome

Wire post by BioStar

BioStar — Wed, 18 Aug 2021 04:33:26 -0500

Genome assembly PPT http://rayan.chikhi.name/pdf/2018-evomics-assembly-kmers.pdf #Genome #Assembly #PPT #Ryan

Wire post by Jit

Jit — Thu, 18 Jun 2020 05:26:38 -0500

New #phased #genome #assembly revealed, scandalous #rotifers have #homologous #chromosomes ! https://www.biorxiv.org/content/10.1101/2020.06.16.155473v1

Wire post by Jit

Jit — Sun, 02 Feb 2020 13:46:07 -0600

#Improving draft #assemblies by iterative mapping and #assembly of short reads to eliminate #gaps https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-4-r41

Wire post by Jit

Jit — Thu, 05 Dec 2019 05:50:39 -0600

#BlobToolKit can be used during #assembly to filter non-target DNA, helping researchers produce assemblies with high biological credibility. https://blobtoolkit.genomehubs.org/view #Genome #Blob #Con

Wire post by Jit

Jit — Tue, 09 Jul 2019 13:32:08 -0500

Transcript assembly and quantification for RNA-Seq https://github.com/mpertea/stringtie2 #Transcript #assembly

Wire post by Jit

Jit — Sat, 22 Jun 2019 11:26:21 -0500

Nanopore sequencing and #assembly of a human genome with ultra-long reads https://www.nature.com/articles/nbt.4060

Wire post by Abhimanyu Singh

Abhimanyu Singh — Thu, 06 Jun 2019 08:26:01 -0500

Informatics for #RNA-seq: A web resource for analysis on the cloud https://github.com/griffithlab/rnaseq_tutorial/wiki #Scripts #Assembly

Wire post by Rahul Nayak

Rahul Nayak — Thu, 21 Feb 2019 10:17:22 -0600

De novo genome assembly https://astrobiomike.github.io/genomics/de_novo_assembly #Genome #Assembly #DeNovo #Genome

Wire post by Rahul Nayak

Rahul Nayak — Thu, 21 Feb 2019 10:16:23 -0600

Errors in sequence assembly and corrections (Bioinformatics) http://what-when-how.com/bioinformatics/errors-in-sequence-assembly-and-corrections-bioinformatics/ #Assembly #Error

Wire post by Rahul Nayak

Rahul Nayak — Thu, 21 Feb 2019 10:15:05 -0600

Long read assembly workshop https://www.melbournebioinformatics.org.au/tutorials/tutorials/pacbio/ #Long #Reads #Assembly #PacBio #Learn #Tutorial #Workshop

Wire post by Rahul Nayak

Rahul Nayak — Thu, 21 Feb 2019 10:13:52 -0600

https://bioinformaticsdotca.github.io/high-throughput_biology_2017 #NGS #Tutorial #Learn #Assembly

Wire post by Jit

Jit — Fri, 08 Feb 2019 07:34:24 -0600

Machine learning meets genome assembly https://academic.oup.com/bib/advance-article-abstract/doi/10.1093/bib/bby072/5074612 #genome #assembly #machine #learning

Wire post by Jit

Jit — Mon, 04 Feb 2019 13:26:13 -0600

samtools mpileup -uf reference.nt mapping.bam | bcftools call -c | vcfutils.pl vcf2fq > consensus.fasta #Genome #Assembly #Reference