BOL: Wire posts tagged with 'BLAST'

Wire post by Jit

Jit — Wed, 18 Sep 2019 22:01:03 -0500

E-value & Bit-score http://www.metagenomics.wiki/tools/blast/evalue #E-value #Bit-score #blast #Score

Wire post by BioStar

BioStar — Thu, 20 Dec 2018 11:56:36 -0600

Blast database https://ftp.ncbi.nih.gov/blast/db/ #blast #database

Wire post by BioJoker

BioJoker — Tue, 11 Dec 2018 10:15:08 -0600

Alignment algorithms http://vlab.amrita.edu/?sub=3&brch=274&sim=1431&cnt=1 #Alignments #Algo #Blast

Wire post by Jit

Jit — Wed, 27 Jun 2018 15:20:29 -0500

#tBLASTn #command line $ tblastn -query Avaga.pep.out.45.fa -db myDB -outfmt 6 -out output_file -evalue 1e-5 -max_target_seqs 1 #Blast #Protein

Wire post by Rahul Agarwal

Rahul Agarwal — Fri, 30 Mar 2018 12:39:52 -0500

http://papers.genomics.lbl.gov/cgi-bin/litSearch.cgi #Publication #blast

Wire post by Shruti Paniwala

Shruti Paniwala — Fri, 23 Jun 2017 13:10:42 -0500

Understanding BLAST scores http://homepages.ulb.ac.be/~dgonze/TEACHING/stat_scores.pdf #blast #score

Wire post by Radha Agarkar

Radha Agarkar — Wed, 21 Jun 2017 09:00:10 -0500

Understanding BitScore https://www.ctu.edu.vn/~dvxe/Bioinformatic%20course/lectures/scores.pdf #Blast #Bit #BitScore

Wire post by Jit

Jit — Thu, 18 May 2017 09:54:31 -0500

#Target 4 and #HSPS 1 with #blast $ blastn -task megablast -query brkSeq.fa -db myDBAvaga -evalue 1e-5 -num_threads 1 -max_target_seqs 4 -max_hsps 1 -outfmt '6' -out output

Wire post by Jit

Jit — Thu, 02 Mar 2017 10:53:42 -0600

Understanding MegaBlast https://gordonlab.wustl.edu/btheta/blast/docs/megablast_readme.html #Blast #BLASTn #MegaBlast #Alignment

Wire post by Poonam Mahapatra

Poonam Mahapatra — Wed, 07 Dec 2016 08:46:54 -0600

BLAST cheats heat http://www.vicbioinformatics.com/documents/Quick_Start_Guide_BLAST_to_BLAST+.pdf #BLAST #NCBI #Cheat

Wire post by Shruti Paniwala

Shruti Paniwala — Wed, 15 Jun 2016 05:16:04 -0500

Update NCBI BLAST database in your local Linux system $ update_blastdb --passive --decompress nr nt #BLAST #Updates #NT #NR #Linux

Wire post by Radha Agarkar

Radha Agarkar — Sat, 21 May 2016 22:19:11 -0500

Web BLAST ftp://ftp.ncbi.nlm.nih.gov/blast/documents/web_blast.pl #BLAST #Web #Online

Wire post by Nishi Singh

Nishi Singh — Sun, 29 Nov 2015 03:51:32 -0600

#Local #BLAST tutorial http://www.woolfit.net/perl/51blastall.html

Wire post by Rahul Nayak

Rahul Nayak — Mon, 28 Sep 2015 10:16:16 -0500

The BLAST parser http://kirill-kryukov.com/study/tools/blast-parser/ #BLAST #Parser #Genome #Match #Sequence #Similarity