https://bioinformaticsonline.com/thewire/tag/Bacteria? https://bioinformaticsonline.com/thewire/view/39256 Mon, 15 Apr 2019 09:04:59 -0500 https://bioinformaticsonline.com/thewire/view/39256 https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evz072/5428150 #HGT #Bacteria #Symbiont

]]> Jit https://bioinformaticsonline.com/thewire/view/34683 Sat, 16 Dec 2017 16:28:34 -0600 https://bioinformaticsonline.com/thewire/view/34683 Beginner’s guide to comparative bacterial genome analysis using next-generation sequence data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630013/ #Bacteria #NGS #Comparative #Genomics

]]> Jit https://bioinformaticsonline.com/thewire/view/34244 Fri, 10 Nov 2017 03:57:18 -0600 https://bioinformaticsonline.com/thewire/view/34244 hybrid assembly pipeline for bacterial genomes with Unicycler: https://github.com/rrwick/Unicycler #Unicycler #Hybrid #Bacteria

]]> Jit https://bioinformaticsonline.com/thewire/view/32721 Mon, 15 May 2017 10:01:29 -0500 https://bioinformaticsonline.com/thewire/view/32721 Genome of interest Bacillus amyloliquefaciens https://www.ncbi.nlm.nih.gov/genome/genomes/848 #Bacteria

]]> Jit https://bioinformaticsonline.com/thewire/view/32488 Fri, 05 May 2017 12:48:55 -0500 https://bioinformaticsonline.com/thewire/view/32488 Decontamination https://img.jgi.doe.gov/er/doc/SingleCellDataDecontamination.pdf #Bacteria #Contamination

]]> Jit https://bioinformaticsonline.com/thewire/view/32351 Mon, 24 Apr 2017 07:10:36 -0500 https://bioinformaticsonline.com/thewire/view/32351 Meta-genomics assembly http://denbi-metagenomics-workshop.readthedocs.io/en/latest/index.html #Genomics #Meta #Assembly #Bacteria #Workshop #Tutorial

]]> BioStar https://bioinformaticsonline.com/thewire/view/14878 Wed, 03 Sep 2014 17:56:54 -0500 https://bioinformaticsonline.com/thewire/view/14878 Ragout—a reference-assisted assembly tool for bacterial genomes http://bioinformatics.oxfordjournals.org/content/30/12/i302.short #Genome #Assembly #Reference #Ragout #Bacteria

]]> Jitendra Narayan https://bioinformaticsonline.com/thewire/view/11586 Fri, 06 Jun 2014 16:28:28 -0500 https://bioinformaticsonline.com/thewire/view/11586 Assemble short reads http://ged.msu.edu/angus/tutorials/short-read-assembly.html #Tutorial #ABySS #Bacteria #Reads #Assembly #Genomics #NGS

]]> Jitendra Narayan https://bioinformaticsonline.com/thewire/view/11321 Sat, 31 May 2014 17:19:17 -0500 https://bioinformaticsonline.com/thewire/view/11321 Bacterial genome assembly tips using Valvet http://pathogenomics.bham.ac.uk/blog/2009/09/tips-for-de-novo-bacterial-genome-assembly/ #Assembly #NGS #Bacteria #Genome #Tricks #Tips #Velvet

]]> John Parker