<![CDATA[BOL: Wire posts tagged with 'Bedtools']]> https://bioinformaticsonline.com/thewire/tag/Bedtools? https://bioinformaticsonline.com/thewire/view/35933 Wed, 14 Mar 2018 10:31:04 -0500 https://bioinformaticsonline.com/thewire/view/35933 <![CDATA[Wire post by Rahul Nayak]]> Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed #Bed #Extract #Sequence #bedtools

]]> Rahul Nayak https://bioinformaticsonline.com/thewire/view/33465 Thu, 08 Jun 2017 04:52:14 -0500 https://bioinformaticsonline.com/thewire/view/33465 <![CDATA[Wire post by Jit]]> Bedtools wiki https://code.google.com/archive/p/bedtools/wikis/Usage.wiki #Wiki #Bedtools

]]> Jit https://bioinformaticsonline.com/thewire/view/31432 Wed, 08 Mar 2017 08:11:52 -0600 https://bioinformaticsonline.com/thewire/view/31432 <![CDATA[Wire post by Jit]]> Get the fasta sequence of the coordinates http://bedtools.readthedocs.io/en/latest/content/tools/getfasta.html #Fasta #Bed #Coordinates #Bedtools

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