BOL: Wire posts tagged with 'Genome'

Wire post by Rahul Nayak

Rahul Nayak — Tue, 06 Mar 2018 03:04:15 -0600

Ten steps to get started in #Genome #Assembly and #Annotation https://f1000research.com/articles/7-148/v1

Wire post by Jit

Jit — Thu, 15 Feb 2018 10:16:00 -0600

Estimate the genome size https://bioinformatics.uconn.edu/genome-size-estimation-tutorial/ #Genome #Size #Estimate

Wire post by Rahul Agarwal

Rahul Agarwal — Tue, 09 Jan 2018 05:15:14 -0600

http://www.iprotein.info/ #genome #pathways #visualisation

Wire post by Jit

Jit — Thu, 07 Dec 2017 12:55:05 -0600

Why are de Bruijn #graphs useful for #genome #assembly? https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5531759/

Wire post by Rahul Nayak

Rahul Nayak — Thu, 08 Jun 2017 09:12:07 -0500

Convert masked genome to N letters. $ perl -pe '/^[^>]/ and $_=~ s/[a-z]/N/g' genomic.fna > genomic.N-masked.fna #Genome #Masked #N #Convert

Wire post by Rahul Nayak

Rahul Nayak — Thu, 08 Jun 2017 09:10:37 -0500

Unmasking the lower case values in genome. $ perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna #Genome #Unmask #Perl #Oneliner

Wire post by Jit

Jit — Tue, 23 May 2017 07:55:00 -0500

#Genome #submission to #GenBank https://www.ncbi.nlm.nih.gov/genbank/genomesubmit/

Wire post by Jit

Jit — Thu, 06 Apr 2017 11:10:29 -0500

Plotting alignment genome.crg.es/software/gfftools/GFF2APLOT.html #Alignment #Plot #Genome #gff #gfftools

Wire post by Jit

Jit — Mon, 06 Mar 2017 03:52:51 -0600

Steps for #Prokaryotic #genome #assembly and #annotation http://www.edamamecourse.org/docs/metagenome_assembly_and_annotation.html

Wire post by Jit

Jit — Fri, 24 Feb 2017 04:49:20 -0600

AVID: A Global Alignment Program https://www.ncbi.nlm.nih.gov/pmc/articles/PMC430967/ #AVID #Alignment #Global #Sequence #Genome

Wire post by Surabhi Chaudhary

Surabhi Chaudhary — Wed, 22 Feb 2017 08:12:56 -0600

Basics for assembly http://ged.msu.edu/angus/files/lecture4-mapping.pdf #Genome #Mapping #Assembly #PPT

Wire post by Jit

Jit — Wed, 14 Dec 2016 09:45:28 -0600

Mammalian Meiotic Recombination: A Toolbox for Genome Evolution http://www.karger.com/Article/FullText/452822 #Mammals #Genome #Breakpoints #Evolution #Recombination

Wire post by Hardeep Kaur

Hardeep Kaur — Mon, 21 Nov 2016 05:06:35 -0600

Genome and coverage https://rtsf.natsci.msu.edu/_rtsf/assets/File/depth%20and%20coverage.pdf #Coverage #Genome #Depth #Reads #NGS

Wire post by Shruti Paniwala

Shruti Paniwala — Tue, 25 Oct 2016 05:25:43 -0500

Coverage R Plot http://davetang.org/muse/2013/09/07/creating-a-coverage-plot-in-r/ #R #Plot #Genome #Image #NGS #BAM

Wire post by Jit

Jit — Fri, 09 Sep 2016 06:01:49 -0500

Understanding N50 http://jermdemo.blogspot.be/2008/11/calculating-n50-from-velvet-output.html #N50 #Assembly #Genome #Contigs