BOL: Wire posts tagged with 'Length'

Wire post by Rahul Nayak

Rahul Nayak — Fri, 21 Jan 2022 21:14:54 -0600

Fold the FASTA sequences with length $ fold -w 100 genome.fa #Fasta #Genome #Fold #Break #Length

Wire post by Aaryan Lokwani

Aaryan Lokwani — Fri, 22 Jun 2018 04:41:13 -0500

Count the contigs length in index fasta file with samtools. $ awk '{s+=$2}END{print s}' scaffolds.fasta.fai #Fasta #Index #Length #Count #Size #Samtools

Wire post by Shruti Paniwala

Shruti Paniwala — Mon, 23 Jan 2017 05:01:08 -0600

Fasta sequence length: awk '/^>/ {if (seqlen){print seqlen}; print ;seqlen=0;next; } { seqlen += length($0)}END{print seqlen}' file.fa #Length #Linux #OneLiner