BOL: Wire posts tagged with 'NGS'

Wire post by Jit

Jit — Tue, 09 Aug 2016 03:38:30 -0500

Reads QC http://evomicsorg.wpengine.netdna-cdn.com/wp-content/uploads/2015/01/introQC.pdf #Quality #Reads #NGS

Wire post by Abhimanyu Singh

Abhimanyu Singh — Thu, 21 Jul 2016 14:06:40 -0500

#Duplication #FastQC http://proteo.me.uk/2013/09/a-new-way-to-look-at-duplication-in-fastqc-v0-11/ #Sequencing #NGS

Wire post by Jit

Jit — Mon, 18 Jul 2016 10:08:21 -0500

Plot the coverage in R http://cnr.lwlss.net/SeqCoverage/ #BAM #SAM #R #NGS #Plot

Wire post by Jit

Jit — Thu, 30 Jun 2016 04:48:56 -0500

Extract reference nucleotide from BAM file: samtools view your.bam | awk '{print substr( $10, 100, 1)}' #SAM #BAM #Samtools #Tricks #NGS

Wire post by Jit

Jit — Mon, 27 Jun 2016 09:02:08 -0500

#NGS basics http://deeptools.readthedocs.io/en/latest/content/help_glossary.html #Tutorial #Help

Wire post by Jit

Jit — Mon, 23 May 2016 06:57:17 -0500

Coming of age: ten years of next-generation sequencing technologies http://www.nature.com/nrg/journal/v17/n6/full/nrg.2016.49.html #Sequencing #Technology #NGS #Updates

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 01 Feb 2016 09:32:25 -0600

A Multiscale Synteny Browser tool MizBee http://www.cs.utah.edu/~miriah/mizbee/Overview.html #Synteny #Browser #Genome #NGS #ComparativeGenomics

Wire post by Neel

Neel — Wed, 14 Oct 2015 01:18:18 -0500

Sometime NGS is just tiring #ngs #research

Wire post by Rahul Nayak

Rahul Nayak — Fri, 09 Oct 2015 06:03:07 -0500

Genomic data analysis http://www.bicnirrh.res.in/workshop.php #Genome #Data #Analysis #NGS #NIRRH #Mumbai

Wire post by Rahul Nayak

Rahul Nayak — Wed, 09 Sep 2015 16:17:11 -0500

Count the number of sequences in fastaq file. grep -c '^@' sample1.fq #Fastaq #Count #Number #Grep #Dirty #Oneliner #NGS

Wire post by Rahul Agarwal

Rahul Agarwal — Thu, 16 Jul 2015 16:53:29 -0500

http://massgenomics.org/ #NGS #medical genomics

Wire post by Rahul Nayak

Rahul Nayak — Tue, 07 Jul 2015 18:55:52 -0500

Big Data: Astronomical or Genomical? http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1002195 #Future #Genomics #Growth #Sequencing #NGS

Wire post by Jit

Jit — Sun, 01 Mar 2015 02:42:55 -0600

A universal genomic coordinate translator for comparative genomics http://nedaz.github.io/kraken/ #NGS #Coordinate #Translator

Wire post by Jit

Jit — Sun, 01 Mar 2015 02:39:23 -0600

A Dockerized Next Generation Sequencing Pipeline http://khp-informatics.github.io/ngs/ #NGS #Docker #Annotation

Wire post by Rahul Agarwal

Rahul Agarwal — Thu, 13 Nov 2014 06:04:15 -0600

http://compbio.cs.brown.edu/software/ #tools #ngs #seq #SVs #mutation