BOL: Wire posts tagged with 'NGS'

Wire post by John Parker

John Parker — Fri, 06 Jun 2014 15:39:52 -0500

NGS analysis pipeline http://www.egr.msu.edu/changroup/Protocols/NGS%20analysis%20example%20of%20a%20pipeline.html #Pipeline #NGS #Genomics #Tutorial

Wire post by Rahul Nayak

Rahul Nayak — Tue, 03 Jun 2014 10:39:47 -0500

NGSplot program allows you to easily visualize your NGS samples at functional genomic regions. https://code.google.com/p/ngsplot/ #NGS #ngs #Plot #ngsplot #Visualize #R

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 02 Jun 2014 13:47:42 -0500

R getting strong for NGS analysis http://manuals.bioinformatics.ucr.edu/home/ht-seq #Packages #NGS #R #Bioconductor #Bowtie #Sequence #Analysis #SNP

Wire post by John Parker

John Parker — Sat, 31 May 2014 17:19:17 -0500

Bacterial genome assembly tips using Valvet http://pathogenomics.bham.ac.uk/blog/2009/09/tips-for-de-novo-bacterial-genome-assembly/ #Assembly #NGS #Bacteria #Genome #Tricks #Tips #Velvet

Wire post by Jitendra Narayan

Jitendra Narayan — Fri, 30 May 2014 06:08:14 -0500

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. https://github.com/lh3/seqtk #FASTA #FASTAQ #NGS

Wire post by Jit

Jit — Fri, 23 May 2014 10:11:28 -0500

Extract list of read ID from bam file: samtools view mbi.sorted.bam |perl -ne '/ID/ && print' > extractedID.sam #Extract #Ids #SAM #BAM #NGS

Wire post by Jit

Jit — Fri, 23 May 2014 10:10:20 -0500

FastaQ 2 Fasta Oneliner: paste - - - -< totalRNA_placental_1.fastq | perl -pale'$_="@F[0..1]"'|tr "\^@" "\>" | perl -pale 's/\s/\n/g' #Oneliner #NGS #FastaQ #Fasta

Wire post by Radha Agarkar

Radha Agarkar — Sat, 10 May 2014 21:26:24 -0500

Webinar http://webinars.sciencemag.org/webinar/archive/importance-bioinformatics-ngs #NGS #Webinar