BOL: Wire posts tagged with 'OneLiner'

Wire post by Rahul Nayak

Rahul Nayak — Thu, 05 Jun 2014 14:34:39 -0500

rename all *.txt as *.bak: find . -name "*.txt" | sed "s/\.txt$//" | xargs -i echo mv {}.txt {}.bak | sh #Linux #Rename #Oneliner

Wire post by Jit

Jit — Fri, 23 May 2014 10:10:20 -0500

FastaQ 2 Fasta Oneliner: paste - - - -< totalRNA_placental_1.fastq | perl -pale'$_="@F[0..1]"'|tr "\^@" "\>" | perl -pale 's/\s/\n/g' #Oneliner #NGS #FastaQ #Fasta

Wire post by Neel

Neel — Mon, 12 May 2014 04:47:30 -0500

zcat input_file.fastq.gz | awk 'NR%4==1{printf ">%s\n", substr($0,2)}NR%4==2{print}' > output_file.fa #fastaQ2fasta #fastaq #fasta #Oneliner