https://bioinformaticsonline.com/thewire/tag/Perl?offset=15 https://bioinformaticsonline.com/thewire/view/36088 Fri, 30 Mar 2018 08:12:23 -0500 https://bioinformaticsonline.com/thewire/view/36088 Glob multiple files in Linux with Perl. my @soundfiles = grep {/\.(wav|mid|mp3|rm|ogg)$/i} glob("*"); #Perl #Linux #Glob

]]> Jit https://bioinformaticsonline.com/thewire/view/34540 Wed, 06 Dec 2017 09:09:51 -0600 https://bioinformaticsonline.com/thewire/view/34540 Store all files in a array using perl: my @filesbwa = <$base_name/reads/$base_name.$library.bwa.*fa> #Store #Keep #Array #Perl

]]> Neel https://bioinformaticsonline.com/thewire/view/34154 Tue, 08 Aug 2017 10:22:13 -0500 https://bioinformaticsonline.com/thewire/view/34154 Scripts for Phylogenetics at https://github.com/gigascience/paper-jarvis2014 #Phylogenetics #Script #Perl

]]> Neel https://bioinformaticsonline.com/thewire/view/33783 Fri, 30 Jun 2017 11:45:35 -0500 https://bioinformaticsonline.com/thewire/view/33783 Perl regular expression syntax. https://www.cs.tut.fi/~jkorpela/perl/regexp.html #Perl #Regexp #Learn #Help

]]> Shruti Paniwala https://bioinformaticsonline.com/thewire/view/33704 Tue, 27 Jun 2017 04:47:38 -0500 https://bioinformaticsonline.com/thewire/view/33704 Perl basics http://perldoc.perl.org/perlrequick.html #Perl #quick

]]> Jit https://bioinformaticsonline.com/thewire/view/33548 Fri, 16 Jun 2017 09:50:02 -0500 https://bioinformaticsonline.com/thewire/view/33548 Run length coding https://www.rosettacode.org/wiki/Run-length_encoding#Perl #Perl #String

]]> Jit https://bioinformaticsonline.com/thewire/view/33472 Thu, 08 Jun 2017 09:10:37 -0500 https://bioinformaticsonline.com/thewire/view/33472 Unmasking the lower case values in genome. $ perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna #Genome #Unmask #Perl #Oneliner

]]> Rahul Nayak https://bioinformaticsonline.com/thewire/view/33469 Thu, 08 Jun 2017 07:48:20 -0500 https://bioinformaticsonline.com/thewire/view/33469 Update CPAN $ cpan> install CPAN; reload cpan #cpan #perl

]]> Rahul Nayak https://bioinformaticsonline.com/thewire/view/33454 Tue, 06 Jun 2017 10:34:52 -0500 https://bioinformaticsonline.com/thewire/view/33454 Handling #CSV file with #Perl http://perlmeme.org/tutorials/parsing_csv.html

]]> Jit https://bioinformaticsonline.com/thewire/view/33375 Thu, 01 Jun 2017 09:57:41 -0500 https://bioinformaticsonline.com/thewire/view/33375 Perl courses https://www.gossland.com/perlcourse/default/index #Perl #Courses #Tutorial

]]> Jit https://bioinformaticsonline.com/thewire/view/32626 Thu, 11 May 2017 14:09:42 -0500 https://bioinformaticsonline.com/thewire/view/32626 Chi squared test https://edwards.sdsu.edu/research/calculating-chi-squared-wiht-perl/ #Perl #Chi #Probability

]]> Shruti Paniwala https://bioinformaticsonline.com/thewire/view/32408 Tue, 02 May 2017 09:34:11 -0500 https://bioinformaticsonline.com/thewire/view/32408 Perl OneLiner http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/oneliners.html #Perl #Oneliner #NGS #Script

]]> Jit https://bioinformaticsonline.com/thewire/view/32224 Thu, 20 Apr 2017 07:29:03 -0500 https://bioinformaticsonline.com/thewire/view/32224 use File::Basename; use lib dirname (__FILE__); # To search lib in local folder #Perl #Modules

]]> Jit https://bioinformaticsonline.com/thewire/view/32196 Wed, 19 Apr 2017 16:44:53 -0500 https://bioinformaticsonline.com/thewire/view/32196 Data structure with R http://staff.washington.edu/jon/dsa-perl/dsa-perl.html #R #Data #Structure #Script #Perl

]]> Shruti Paniwala https://bioinformaticsonline.com/thewire/view/31978 Thu, 30 Mar 2017 18:11:15 -0500 https://bioinformaticsonline.com/thewire/view/31978 Collection of Perl scripts for bioinformatician https://github.com/vikas0633/perl #Perl #Bioinfo #Scripts

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