BOL: Wire posts tagged with 'Perl'

Wire post by Jit

Jit — Tue, 10 Jun 2014 05:34:41 -0500

Count the total number of lines in a file. my $total=@{[]}; #Perl #Count #Number #Total #File

Wire post by Jit

Jit — Fri, 06 Jun 2014 02:55:27 -0500

Remove the blank space from a fasta file. perl -nlwe 'tr/ //d; print if length' fileName #Delete #Space #Fasta #Perl #Oneliner

Wire post by Jit

Jit — Fri, 06 Jun 2014 02:38:28 -0500

perl -nle 'if (/^>/) { $sl = 0; print; next } next if ($sl >= 200); $_ = substr($_, 0, 200-$sl) if ($sl + length($_) > 200); $sl += length($_); print;' file.fa >new.fa #Perl #Extract #Fasta

Wire post by Jit

Jit — Thu, 05 Jun 2014 02:09:02 -0500

Force install a Perl module sudo PERL_MM_USE_DEFAULT=1 perl -MCPAN -e "CPAN::Shell->force(qw(install Nginx::Log::Entry))" #Perl #Install #Force #CPAN #Module

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 04 Jun 2014 14:15:45 -0500

Use multi-core with Perl programs http://perltricks.com/article/61/2014/1/21/Make-your-code-run-faster-with-Perl-s-secret-turbo-module #Perl #MCE #Speed #Module

Wire post by Abhimanyu Singh

Abhimanyu Singh — Fri, 30 May 2014 06:15:37 -0500

Perl scripts for Bioinformatics http://jura.wi.mit.edu/bio/bioinfo/scripts/ #Perl #Bioinformatics #Genetics #Scripts

Wire post by Jit

Jit — Thu, 29 May 2014 06:35:45 -0500

Install Bioperl on ubuntu : sudo apt-get install bioperl #Bioperl #Install #Perl

Wire post by Rahul Nayak

Rahul Nayak — Sun, 11 May 2014 10:16:51 -0500

perl -nle '$count += () = /XY[0-9]+/g; END {print $count}' inputfile #Count #Perl #Perloneliner

Wire post by Rahul Nayak

Rahul Nayak — Wed, 26 Feb 2014 07:12:06 -0600

Perl module http://perlmaven.com/how-to-create-a-perl-module-for-code-reuse #Perl #Module #Package

Wire post by Shruti Paniwala

Shruti Paniwala — Mon, 24 Feb 2014 04:31:45 -0600

Useful perl scripts collections http://raven.iab.alaska.edu/~ntakebay/teaching/programming/perl-scripts/perl-scripts.html #Perl #Scripts

Wire post by Rahul Nayak

Rahul Nayak — Tue, 19 Nov 2013 08:51:11 -0600

Perl Regular expression http://raven.iab.alaska.edu/~ntakebay/teaching/programming/perl2nd/node1.html #Perl #RegularExpression

Wire post by Shikha Logwani

Shikha Logwani — Thu, 17 Oct 2013 13:16:59 -0500

Perl Special Variables Quick Reference http://www.perlmonks.org/?node_id=353259 #Perl

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 07 Oct 2013 06:35:41 -0500

Convert space separated data to tab separated: perl -p -i -e 's/\s+/\t/g' file.txt #Perl #Tipsoftheday #Perlonliner

Wire post by Rahul Nayak

Rahul Nayak — Wed, 02 Oct 2013 09:15:50 -0500

GenBank to FASTA format conversion, Written By Junguk HUR http://tinyurl.com/ntp7w5v #Perl #FASTA #Genbank

Wire post by Jit

Jit — Sat, 21 Sep 2013 15:08:37 -0500

Some useful tricks for next generation seq analyst http://chicken.genouest.org/ #Perl #R #C/C++