https://bioinformaticsonline.com/thewire/tag/Quality? https://bioinformaticsonline.com/thewire/view/43297 Fri, 20 Aug 2021 10:35:30 -0500 https://bioinformaticsonline.com/thewire/view/43297 #Convert #FASTQ to FASTA and set bases of #quality lower than 20 to N $ seqtk seq -aQ64 -q20 -n N IN.fastq > OUT.fasta

]]> Jit https://bioinformaticsonline.com/thewire/view/38631 Tue, 08 Jan 2019 08:34:36 -0600 https://bioinformaticsonline.com/thewire/view/38631 #CheckM provides a set of tools for #assessing the #quality of #genomes recovered from isolates, single cells, or #metagenomes. http://ecogenomics.github.io/CheckM/

]]> BioJoker https://bioinformaticsonline.com/thewire/view/36882 Fri, 08 Jun 2018 10:20:19 -0500 https://bioinformaticsonline.com/thewire/view/36882 reformat.sh in=reads.fq out=highQuality.fq maq=16
(that will throw away all reads with average quality below 16) #Filter #BBMap #Quality

]]> Jit https://bioinformaticsonline.com/thewire/view/28658 Tue, 09 Aug 2016 03:38:30 -0500 https://bioinformaticsonline.com/thewire/view/28658 Reads QC http://evomicsorg.wpengine.netdna-cdn.com/wp-content/uploads/2015/01/introQC.pdf #Quality #Reads #NGS

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