BOL: Wire posts tagged with 'Single'

Wire post by BioStar

BioStar — Wed, 31 Jan 2024 00:41:00 -0600

#Multi-line fasta to #Single-line Fasta $ awk '/^>/ {if (NR>1) print ""; printf("%s\n", $0); next; } { printf("%s", $0) } END { printf("\n"); }' multi_line.fasta > single_line.fasta

Wire post by Rahul Agarwal

Rahul Agarwal — Thu, 30 Jan 2020 16:39:58 -0600

https://github.com/AllonKleinLab/scrublet #Doublet #removal #single #cell

Wire post by Rahul Agarwal

Rahul Agarwal — Thu, 30 Jan 2020 16:39:04 -0600

https://panglaodb.se/index.html #Single #Cell #database

Wire post by Rahul Agarwal

Rahul Agarwal — Thu, 30 Jan 2020 16:38:25 -0600

https://www.cartana.se/ #Brain #Single #cell #sequencing

Wire post by LEGE

LEGE — Mon, 25 Nov 2019 12:02:37 -0600

Multiline to singleline covert. $ awk '/^>/ {printf("%s%s\t",(N>0?"\n":""),$0);N++;next;} {printf("%s",$0);} END {printf("\n");}' < input.fa #Multi #Single #Convert #awk

Wire post by Neel

Neel — Mon, 01 Oct 2018 09:03:12 -0500

Multifasta to singleline fasta. $ awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa #Multi #Single #Fasta #Convert