BOL: Wire posts tagged with 'SingleLine'

Wire post by Rahul Nayak

Rahul Nayak — Wed, 05 Sep 2018 05:09:15 -0500

Multi-line fasta to single line fasta $ perl -pe '/^>/ ? print "\n" : chomp' in.fasta | tail -n +2 > out.fasta #Multiline #Singleline #Fasta

Wire post by Jit

Jit — Tue, 28 Aug 2018 04:27:30 -0500

#Multiline Fasta To #SingleLine Fasta $ awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa

Wire post by Jit

Jit — Thu, 09 Aug 2018 17:03:49 -0500

perl -pe '/^>/ ? print "\n" : chomp' LR.fasta | tail -n +2 > out.fasta #singleLine #Multifasta #Multi2Single

Wire post by Neel

Neel — Tue, 12 Jun 2018 13:30:49 -0500

#Convert a #multi-line #fasta to a #singleline #fasta $ awk '!/^>/ { printf "%s", $0; n = "\n" } /^>/ { print n $0; n = "" } END { printf "%s", n }' sample1.fa > sample1_singleline.fa