BOL: Wire posts tagged with 'alignment'

Wire post by Rahul Agarwal

Rahul Agarwal — Thu, 16 Jul 2015 16:51:43 -0500

https://github.com/GWW/RNASequel #Alignment #artifacts

Wire post by Rahul Agarwal

Rahul Agarwal — Thu, 16 Jul 2015 16:50:07 -0500

https://github.com/exascience/elprep #Alignment #tool

Wire post by Rahul Nayak

Rahul Nayak — Fri, 14 Nov 2014 16:44:46 -0600

Sequence analysis http://bio.lundberg.gu.se/courses/ht03/bio1/bio1_e2b.html #Sequence #Alignment #Algorithms #C #C++

Wire post by Jit

Jit — Fri, 14 Nov 2014 12:13:39 -0600

AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references http://bioinformatics.oxfordjournals.org/content/30/12/i319.full #AlignGraph #Alignment #Algo #Referen

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 29 Oct 2014 09:11:32 -0500

Alignathon: A collaborative competition to assess the state of the art in whole genome sequence alignment. http://compbio.soe.ucsc.edu/alignathon/index.html #Alignment #Simulation #Evolver

Wire post by Jit

Jit — Tue, 28 Oct 2014 13:25:15 -0500

AutoOrthoGen http://www.cs.toronto.edu/~buske/documents/buske_2009_autoorthogen.pdf #Genome #Orthologous #Evolver #Multiple #Alignment

Wire post by John Parker

John Parker — Sun, 21 Sep 2014 14:01:36 -0500

MAP2: multiple alignment of syntenic genomic sequences http://nar.oxfordjournals.org/content/33/1/162.full #Alignment #Synteny #Sequence

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 15 Sep 2014 15:41:45 -0500

CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0008861#pone-0008861-g003 #Alignment #CYNTENATOR #Genome

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 03 Sep 2014 17:57:46 -0500

Genome alignment with graph data structures: a comparison http://www.biomedcentral.com/1471-2105/15/99 #Genome #Alignment #Data #Graph

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 25 Aug 2014 06:43:28 -0500

Mercator that constructs orthology maps between multiple whole genomes https://www.biostat.wisc.edu/~cdewey/mercator/ #Synteny #Orthology #Map #Construction #Alignment

Wire post by Jitendra Narayan

Jitendra Narayan — Tue, 12 Aug 2014 15:29:51 -0500

MafFilter: a highly flexible and extensible multiple genome alignment files processor http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3904536/ #MultipleGenomeAlignment #MAF #Genome #Alignment

Wire post by Neel

Neel — Tue, 24 Jun 2014 01:26:50 -0500

RAMICS substantially outperforms other mapping approaches for alignment of coding DNA to reference sequences. http://hiv.sanbi.ac.za/tools#/ramics #Tools #Alignment #NGS #RAMICS