BOL: Wire posts tagged with 'assembly'

Wire post by Rahul Nayak

Rahul Nayak — Sat, 26 Jan 2019 17:38:33 -0600

A De Novo Genome #Assembly Algorithm for #Repeats and Nonrepeats https://www.hindawi.com/journals/bmri/2014/736473/

Jit — Sat, 19 Jan 2019 17:22:51 -0600

Genome assembly tutorial https://bioinformaticsdotca.github.io/high-throughput_biology_2017_module6_lab #tutorial #assembly #tools #steps #pipeline

Jit — Tue, 08 Jan 2019 14:20:34 -0600

I recommend two technologies: long reads to get the genome right, short reads to get the bases right. #Genome #Assembly #Reads #LonfReads

Rahul Nayak — Mon, 07 Jan 2019 08:45:39 -0600

Long reads assembly tutorial https://www.melbournebioinformatics.org.au/tutorials/tutorials/pacbio/ #Long #Reads #PacBio #assembly #Genome

BioJoker — Sat, 29 Dec 2018 15:22:34 -0600

TIGER: tiled iterative genome assembler https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526431/ #genome #assembly #tool

Rahul Nayak — Mon, 08 Oct 2018 04:07:37 -0500

https://pb-falcon.readthedocs.io/en/latest/quick_start.html#quick-start #Falcon-Unzip #Genome #Assembly

Rahul Nayak — Sat, 22 Sep 2018 18:44:09 -0500

Nice genome assembly tutorial http://aidenlab.org/assembly/manual_180322.pdf #Assembly #Tutorial #Genome #NGS

Jit — Tue, 31 Jul 2018 07:58:00 -0500

Genome assembly https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-43.pdf #Genome #Assembly #Tutorial

Jit — Mon, 30 Jul 2018 10:54:22 -0500

#Canu #assembly of long reads https://canu.readthedocs.io/en/latest/quick-start.html

Jit — Mon, 30 Jul 2018 07:35:16 -0500

Assembly Conversion https://ics.hutton.ac.uk/tablet/assembly-conversion/ #Assembly #Conversion #NGS

Jit — Fri, 13 Jul 2018 08:56:18 -0500

http://qb.cshl.edu/assemblytics/ #Analysis #Genome #Mummer #Assembly #Assemblytics

Rahul Nayak — Tue, 03 Jul 2018 05:01:20 -0500

Transcriptome assembly https://www.rna-seqblog.com/tag/transcriptome-assembly/ #RNA-seq #Transcriptome #Assembly

Jit — Fri, 08 Jun 2018 05:32:04 -0500

PacBio genome assembly tools https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbx147/4590140 #PacBio #Assembly #Tools #SMRT #LongReads

Rahul Nayak — Tue, 06 Mar 2018 03:04:15 -0600

Ten steps to get started in #Genome #Assembly and #Annotation https://f1000research.com/articles/7-148/v1

Jit — Thu, 07 Dec 2017 12:55:05 -0600

Why are de Bruijn #graphs useful for #genome #assembly? https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5531759/