BOL: Wire posts tagged with 'assembly'

Wire post by Jit

Jit — Fri, 10 Nov 2017 15:57:09 -0600

Overlap Layout Consensus assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf #OLC #Assembly

Wire post by Jit

Jit — Fri, 10 Nov 2017 08:41:33 -0600

Comparison of the two major classes of #assembly algorithms: overlap–layout–consensus and de-bruijn-graph https://academic.oup.com/bfg/article/11/1/25/191455

Wire post by Jit

Jit — Tue, 07 Nov 2017 09:32:11 -0600

De Bruijn graph Tutorial http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_dbg.pdf #Assembly #Tutorial #DeBruijn

Wire post by Shruti Paniwala

Shruti Paniwala — Mon, 10 Jul 2017 09:31:34 -0500

#Assembly #Algorithms for #Next-Generation Sequencing Data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874646/

Wire post by Jit

Jit — Wed, 31 May 2017 09:45:20 -0500

All about #newbler #assembly https://contig.wordpress.com/ #NGS

Wire post by BioStar

BioStar — Mon, 24 Apr 2017 07:10:36 -0500

Meta-genomics assembly http://denbi-metagenomics-workshop.readthedocs.io/en/latest/index.html #Genomics #Meta #Assembly #Bacteria #Workshop #Tutorial

Wire post by Jit

Jit — Fri, 31 Mar 2017 14:16:09 -0500

Genome assembly tutorial http://marinetics.org/teaching/hts/Assembly.html #assembly #Tutorial #MIRA #IonTorrent

Wire post by Poonam Mahapatra

Poonam Mahapatra — Thu, 30 Mar 2017 04:35:18 -0500

https://github.com/institut-de-genomique/NaS #Assembly

Wire post by Abhimanyu Singh

Abhimanyu Singh — Tue, 07 Mar 2017 10:07:12 -0600

Assembly comparison https://github.com/WGLab/uniline/tree/master/src/assembly_comparison #NGS #Assembly #MUMMer

Wire post by Jit

Jit — Mon, 06 Mar 2017 03:52:51 -0600

Steps for #Prokaryotic #genome #assembly and #annotation http://www.edamamecourse.org/docs/metagenome_assembly_and_annotation.html

Wire post by Jit

Jit — Sat, 04 Mar 2017 07:47:56 -0600

Understanding #Overlap Layout #Consensus #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf #OLC #Assembly

Wire post by Jit

Jit — Mon, 27 Feb 2017 09:45:45 -0600

#Contiguous and #accurate de novo #assembly of #metazoan genomes with modest long read coverage https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkw654

Wire post by Surabhi Chaudhary

Surabhi Chaudhary — Wed, 22 Feb 2017 08:12:56 -0600

Basics for assembly http://ged.msu.edu/angus/files/lecture4-mapping.pdf #Genome #Mapping #Assembly #PPT

Wire post by Bulbul

Bulbul — Thu, 22 Dec 2016 05:32:35 -0600

Python exercise: Genome assembly https://munch-lab.org/2013/11/29/exercise-genome-assembly/ #Python #Assembly #Problems #Assembly

Wire post by Jit

Jit — Mon, 12 Dec 2016 04:12:51 -0600

Assembly and repeats https://www.coursera.org/learn/dna-sequencing/lecture/fKX4C/lecture-third-law-of-assembly-repeats-are-bad #Assembly #Repeats #Bad