BOL: Wire posts tagged with 'assembly'

Wire post by Jit

Jit — Fri, 09 Sep 2016 06:01:49 -0500

Understanding N50 http://jermdemo.blogspot.be/2008/11/calculating-n50-from-velvet-output.html #N50 #Assembly #Genome #Contigs

Wire post by Poonam Mahapatra

Poonam Mahapatra — Mon, 29 Aug 2016 11:46:14 -0500

DiscovarDenovo assembly ppt https://banana-slug.soe.ucsc.edu/_media/team_5_report_1.pdf #PPT #Assembly #Help #Steps

Wire post by Jit

Jit — Thu, 30 Jun 2016 06:54:49 -0500

De #Bruijn #Graph #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_dbg.pdf

Wire post by Abhi

Abhi — Tue, 05 Apr 2016 10:50:53 -0500

#ConPADE: Genome #Assembly Ploidy Estimation from #Next-Generation Sequencing Data http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004229

Wire post by Rahul Nayak

Rahul Nayak — Fri, 16 Jan 2015 13:06:34 -0600

Consensus assembly and allele interpretation pipeline. https://github.com/nmdp-bioinformatics/pipeline #Pipeline #Bioinformatics #Assembly

Wire post by Jitendra Narayan

Jitendra Narayan — Sat, 18 Oct 2014 01:09:14 -0500

An Opinionated History of Genome Assembly Algorithms http://www.homolog.us/blogs/blog/2014/02/21/opinionated-history-genome-assembly-algorithms/ #NGS #Assembly #History

Wire post by Jitendra Narayan

Jitendra Narayan — Sat, 18 Oct 2014 01:03:04 -0500

De novo genome assembly: what every biologist should know http://www.nature.com/nmeth/journal/v9/n4/full/nmeth.1935.html #NGS #Assembly #Genome #Sequencing #DeNovo

Wire post by Rahul Agarwal

Rahul Agarwal — Sat, 11 Oct 2014 11:55:19 -0500

Genome Assembly & Analysis Tool Box (GATB)!! http://gatb.inria.fr/ #genome #assembly

Wire post by Jit

Jit — Fri, 10 Oct 2014 16:02:50 -0500

Genome assembly algorithms http://www.nature.com/subjects/genome-assembly-algorithms #NGS #Assembly #Algorithms #Genome #Tools

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 15 Sep 2014 17:07:51 -0500

SAGE: String-overlap Assembly of GEnomes http://www.biomedcentral.com/1471-2105/15/302/abstract #Genome #SAGE #Assembly

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 03 Sep 2014 17:56:54 -0500

Ragout—a reference-assisted assembly tool for bacterial genomes http://bioinformatics.oxfordjournals.org/content/30/12/i302.short #Genome #Assembly #Reference #Ragout #Bacteria

Wire post by Jit

Jit — Tue, 29 Jul 2014 09:45:15 -0500

114 different tools out there for DNA/RNA assembly https://twitter.com/kbradnam/status/479039027249971201/photo/1 #Assembly #Genome #Tools

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 14 Jul 2014 15:26:12 -0500

Maq: Mapping and Assembly with Qualities http://maq.sourceforge.net/ #Maq #Mapping #Assembly #Qualities

Wire post by Jitendra Narayan

Jitendra Narayan — Fri, 06 Jun 2014 16:28:28 -0500

Assemble short reads http://ged.msu.edu/angus/tutorials/short-read-assembly.html #Tutorial #ABySS #Bacteria #Reads #Assembly #Genomics #NGS

Wire post by John Parker

John Parker — Sat, 31 May 2014 17:19:17 -0500

Bacterial genome assembly tips using Valvet http://pathogenomics.bham.ac.uk/blog/2009/09/tips-for-de-novo-bacterial-genome-assembly/ #Assembly #NGS #Bacteria #Genome #Tricks #Tips #Velvet