BOL: Wire posts tagged with 'consensus'

Wire post by Neel

Neel — Wed, 04 Mar 2020 09:07:48 -0600

Building a #consensus sequence with #vcf files https://cbc.brown.edu/blog/consensus-vcf/

Wire post by Jit

Jit — Wed, 04 Mar 2020 03:46:55 -0600

#Calculate The #Frequency Of Letters In A Biological Sequence, Or The #Consensus Matrix Of A Set Of Sequences https://www.rdocumentation.org/packages/Biostrings/versions/2.40.2/topics/letterFrequency

Wire post by Abhimanyu Singh

Abhimanyu Singh — Thu, 06 Jun 2019 08:31:47 -0500

Scripts to help transposable elements consensus sequences curation https://github.com/4ureliek/ReannTE #Transposable #TE #consensus #ReannTE

Wire post by Jit

Jit — Sat, 19 Jan 2019 17:13:18 -0600

how to polish a genome assembly https://nanopolish.readthedocs.io/en/latest/quickstart_consensus.html #polish #nanopolish #ont #nanopore #consensus

Wire post by Neel

Neel — Fri, 12 Oct 2018 08:12:05 -0500

Generate consensus from BAM file samtools mpileup -uf chr5B_leaf_rust.fasta M27454_5B_reads_sorted.bam | bcftools call -c | vcfutils.pl vcf2fq #BAM #Consensus

Wire post by Neel

Neel — Fri, 12 Oct 2018 07:37:52 -0500

Consensus of nucleotide sequences https://www.perlmonks.org/bare/?node_id=500962 #Consensus #Nucleotide #DNA

Wire post by Jit

Jit — Sat, 04 Mar 2017 07:47:56 -0600

Understanding #Overlap Layout #Consensus #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf #OLC #Assembly