https://bioinformaticsonline.com/thewire/tag/conversion? https://bioinformaticsonline.com/thewire/view/37444 Mon, 30 Jul 2018 07:35:16 -0500 https://bioinformaticsonline.com/thewire/view/37444 Assembly Conversion https://ics.hutton.ac.uk/tablet/assembly-conversion/ #Assembly #Conversion #NGS

]]> Jit https://bioinformaticsonline.com/thewire/view/26750 Wed, 23 Mar 2016 05:48:58 -0500 https://bioinformaticsonline.com/thewire/view/26750 #BAM file to #fastaq #conversion with #Samtool: samtools view filename.bam | awk '{OFS="\t"; print "@"$1"\n"$10"\n+\n"$11}' >| filename.fastq

]]> Surabhi Chaudhary https://bioinformaticsonline.com/thewire/view/26748 Wed, 23 Mar 2016 05:47:41 -0500 https://bioinformaticsonline.com/thewire/view/26748 #BAM file to fasta #conversion with #Samtool: samtools view filename.bam | \
awk '{OFS="\t"; print ">"$1"\n"$10}' - > filename.fasta

]]> Surabhi Chaudhary