BOL: Wire posts tagged with 'genome'

Wire post by BioStar

BioStar — Sat, 18 Feb 2023 07:17:03 -0600

Which human genome to opt for http://lh3.github.io/2017/11/13/which-human-reference-genome-to-use #Genome #Human

Wire post by Rahul Nayak

Rahul Nayak — Fri, 21 Jan 2022 21:14:54 -0600

Fold the FASTA sequences with length $ fold -w 100 genome.fa #Fasta #Genome #Fold #Break #Length

Wire post by LEGE

LEGE — Thu, 16 Sep 2021 06:06:32 -0500

Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer https://www.cell.com/cell-systems/fulltext/S2405-4712(21)00332-X #msDBG #Assembly #Genome

Wire post by Jit

Jit — Sat, 21 Aug 2021 12:25:52 -0500

Whole genome alignment https://pdfs.semanticscholar.org/f64b/68973f1e836e1fcf697de709c3ffb1225ce5.pdf #Whole #Genome #Alignment #PPT

Wire post by BioStar

BioStar — Wed, 18 Aug 2021 04:33:26 -0500

Genome assembly PPT http://rayan.chikhi.name/pdf/2018-evomics-assembly-kmers.pdf #Genome #Assembly #PPT #Ryan

Wire post by Neel

Neel — Wed, 23 Jun 2021 07:49:58 -0500

#Comparative #genome analysis usingsample-specific #string #detection in accurate #longreads https://academic.oup.com/bioinformaticsadvances/advance-article/doi/10.1093/bioadv/vbab005/6290003

Wire post by Jit

Jit — Tue, 23 Mar 2021 07:26:49 -0500

Multi fasta to single fasta files $ perl -ne 'if (/^>(\S+)/) { close OUT; open OUT, ">$1.fasta" } print OUT' genome.fasta #Multi-fasta #fasta #multi #genome #files

Wire post by Jit

Jit — Thu, 18 Jun 2020 05:26:38 -0500

New #phased #genome #assembly revealed, scandalous #rotifers have #homologous #chromosomes ! https://www.biorxiv.org/content/10.1101/2020.06.16.155473v1

Wire post by Neel

Neel — Fri, 12 Jun 2020 10:25:53 -0500

Beginner’s guide to #comparative #bacterial #genome analysis using next-generation sequence data https://microbialinformaticsj.biomedcentral.com/articles/10.1186/2042-5783-3-2

Wire post by Shruti Paniwala

Shruti Paniwala — Tue, 09 Jun 2020 05:02:22 -0500

Long-read human genome sequencing and its applications https://www.nature.com/articles/s41576-020-0236-x #LongReads #Sequencing #Genome #Review

Wire post by Rahul Nayak

Rahul Nayak — Sun, 12 Apr 2020 23:26:13 -0500

Visualize genome in terminal https://asciigenome.readthedocs.io/en/latest/usage.html#quick-start #genome #visualisation

Wire post by biogeek

biogeek — Wed, 11 Mar 2020 08:33:06 -0500

GTN: A genome structure analysis tool http://homepage.fudan.edu.cn/zhouyan/files/2013/09/GNT_manual_v1.0.0.pdf #Tool #Genome #Validation

Wire post by Rahul Agarwal

Rahul Agarwal — Sat, 29 Feb 2020 05:20:40 -0600

https://www.genengnews.com/news/mgi-delivers-the-100-genome-at-agbt-conference/ #10usd #genome #new #bioinformatics #genomics

Wire post by BioStar

BioStar — Thu, 20 Feb 2020 01:04:00 -0600

#Genome #Analysis #Toolkit
#Variant Discovery in High-Throughput #Sequencing Data https://gatk.broadinstitute.org/hc/en-us #GATK

Wire post by Jit

Jit — Wed, 05 Feb 2020 06:28:20 -0600

User can download “fetchChromSizes” from http://hgdownload.cse.ucsc.edu/admin/exe/ #Chr #Genome #Download