https://bioinformaticsonline.com/thewire/tag/genome?offset=30 https://bioinformaticsonline.com/thewire/view/38553 Sat, 29 Dec 2018 15:22:34 -0600 https://bioinformaticsonline.com/thewire/view/38553 TIGER: tiled iterative genome assembler https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526431/ #genome #assembly #tool

]]> BioJoker https://bioinformaticsonline.com/thewire/view/38524 Fri, 21 Dec 2018 22:02:42 -0600 https://bioinformaticsonline.com/thewire/view/38524 Is It #Ordered Correctly? #Validating #Genome #Assemblies by Optical Mapping http://www.plantcell.org/content/30/1/7

]]> Jit https://bioinformaticsonline.com/thewire/view/38455 Thu, 13 Dec 2018 09:00:58 -0600 https://bioinformaticsonline.com/thewire/view/38455 #Search a #genome sequence for secondary #metabolite biosynthetic gene clusters https://antismash.secondarymetabolites.org/#!/start

]]> Rahul Nayak https://bioinformaticsonline.com/thewire/view/38313 Wed, 28 Nov 2018 10:31:56 -0600 https://bioinformaticsonline.com/thewire/view/38313 Ribbon genomics http://genomeribbon.com/ #Visualization #Ribbon #Graph #Genome #BAM #SAM #Mummer

]]> Jit https://bioinformaticsonline.com/thewire/view/38308 Wed, 28 Nov 2018 08:52:32 -0600 https://bioinformaticsonline.com/thewire/view/38308 Selfish genetic elements https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007700 #genetics #selfish #genome

]]> Abhimanyu Singh https://bioinformaticsonline.com/thewire/view/37951 Thu, 18 Oct 2018 09:19:02 -0500 https://bioinformaticsonline.com/thewire/view/37951 http://www.bioconductor.org/packages/release/bioc/vignettes/BSgenome/inst/doc/GenomeSearching.pdf #Genome #Search #Mask

]]> Neel https://bioinformaticsonline.com/thewire/view/37900 Mon, 08 Oct 2018 04:07:37 -0500 https://bioinformaticsonline.com/thewire/view/37900 https://pb-falcon.readthedocs.io/en/latest/quick_start.html#quick-start #Falcon-Unzip #Genome #Assembly

]]> Rahul Nayak https://bioinformaticsonline.com/thewire/view/37769 Sat, 22 Sep 2018 18:44:09 -0500 https://bioinformaticsonline.com/thewire/view/37769 Nice genome assembly tutorial http://aidenlab.org/assembly/manual_180322.pdf #Assembly #Tutorial #Genome #NGS

]]> Rahul Nayak https://bioinformaticsonline.com/thewire/view/37463 Tue, 31 Jul 2018 07:58:00 -0500 https://bioinformaticsonline.com/thewire/view/37463 Genome assembly https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-43.pdf #Genome #Assembly #Tutorial

]]> Jit https://bioinformaticsonline.com/thewire/view/37308 Fri, 13 Jul 2018 19:53:52 -0500 https://bioinformaticsonline.com/thewire/view/37308 Useful #tools for #genome analysis https://gigascience.biomedcentral.com/articles/10.1186/s13742-015-0077-2

]]> Rahul Nayak https://bioinformaticsonline.com/thewire/view/37296 Fri, 13 Jul 2018 08:56:18 -0500 https://bioinformaticsonline.com/thewire/view/37296 http://qb.cshl.edu/assemblytics/ #Analysis #Genome #Mummer #Assembly #Assemblytics

]]> Jit https://bioinformaticsonline.com/thewire/view/37044 Mon, 25 Jun 2018 08:36:09 -0500 https://bioinformaticsonline.com/thewire/view/37044 Genome in a Bottle http://jimb.stanford.edu/giab/ #GIAB #Genome

]]> Rahul Nayak https://bioinformaticsonline.com/thewire/view/37009 Fri, 22 Jun 2018 04:27:08 -0500 https://bioinformaticsonline.com/thewire/view/37009 Genome in a Bottle (GIAB) http://jimb.stanford.edu/giab/ #Genome #Consortium #GIAB

]]> Jit https://bioinformaticsonline.com/thewire/view/36222 Fri, 13 Apr 2018 09:47:39 -0500 https://bioinformaticsonline.com/thewire/view/36222 Parameters for accurate genome alignment https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829014/ #Alignment #Genome

]]> Jit https://bioinformaticsonline.com/thewire/view/36057 Thu, 29 Mar 2018 09:04:37 -0500 https://bioinformaticsonline.com/thewire/view/36057 10,000 Plant genome sequencing project https://db.cngb.org/10kp/ #Plant #Genome #Sequencing

]]> Seema Singh