https://bioinformaticsonline.com/thewire/tag/hits? https://bioinformaticsonline.com/thewire/view/39300 Thu, 25 Apr 2019 08:43:22 -0500 https://bioinformaticsonline.com/thewire/view/39300 Get the secondary hists reads count from SAM awk '{ print $2 }' out.sam| grep "2048" | wc -l #SAM #BAM #Secondary #Hits

]]> Jit https://bioinformaticsonline.com/thewire/view/36007 Wed, 21 Mar 2018 06:48:18 -0500 https://bioinformaticsonline.com/thewire/view/36007 Find matching file names with pattern in a directory. $ ls -dq *_name2search_* | wc -l #file #search #hits #pattern #names #directory

]]> Jit https://bioinformaticsonline.com/thewire/view/32728 Tue, 16 May 2017 08:17:17 -0500 https://bioinformaticsonline.com/thewire/view/32728 Quickly #Finding #Orthologs as Reciprocal Best #Hits with #BLAT, #LAST, and #UBLAST: How Much Do We Miss? http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0101850

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