BOL: Wire posts tagged with 'multi'

Wire post by BioStar

BioStar — Wed, 31 Jan 2024 00:41:00 -0600

#Multi-line fasta to #Single-line Fasta $ awk '/^>/ {if (NR>1) print ""; printf("%s\n", $0); next; } { printf("%s", $0) } END { printf("\n"); }' multi_line.fasta > single_line.fasta

Wire post by Jit

Jit — Tue, 23 Mar 2021 07:26:49 -0500

Multi fasta to single fasta files $ perl -ne 'if (/^>(\S+)/) { close OUT; open OUT, ">$1.fasta" } print OUT' genome.fasta #Multi-fasta #fasta #multi #genome #files

Wire post by LEGE

LEGE — Mon, 25 Nov 2019 12:02:37 -0600

Multiline to singleline covert. $ awk '/^>/ {printf("%s%s\t",(N>0?"\n":""),$0);N++;next;} {printf("%s",$0);} END {printf("\n");}' < input.fa #Multi #Single #Convert #awk

Wire post by Neel

Neel — Mon, 01 Oct 2018 09:03:12 -0500

Multifasta to singleline fasta. $ awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa #Multi #Single #Fasta #Convert

Wire post by Neel

Neel — Tue, 12 Jun 2018 13:30:49 -0500

#Convert a #multi-line #fasta to a #singleline #fasta $ awk '!/^>/ { printf "%s", $0; n = "\n" } /^>/ { print n $0; n = "" } END { printf "%s", n }' sample1.fa > sample1_singleline.fa

Wire post by Jit

Jit — Wed, 10 May 2017 08:41:12 -0500

A #parallel implementation of #gzip for modern #multi-processor, #multi-core machines http://zlib.net/pigz/

Wire post by Abhimanyu Singh

Abhimanyu Singh — Mon, 13 Mar 2017 06:13:21 -0500

#Extract a #sequence from #multi-fasta file: $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file

Wire post by Bulbul

Bulbul — Mon, 19 Dec 2016 13:58:36 -0600

Comparative Genomics Study of #Multi-Drug-Resistance #Mechanisms in the #Antibiotic-Resistant Streptococcus suis R61 Strain https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3180280/