BOL: Wire posts tagged with 'ngs'

Wire post by Rahul Agarwal

Rahul Agarwal — Sun, 07 Jan 2018 14:51:31 -0600

http://www.festivalofgenomicslondon.com/ #biopharma #academia #healthcare #gemonics #ngs #omics

Wire post by Jit

Jit — Sun, 07 Jan 2018 13:38:36 -0600

interleave fastq files https://gist.github.com/nathanhaigh/4544979 #interleave #fastq #pair #ngs #reads

Wire post by Jit

Jit — Sat, 16 Dec 2017 16:28:34 -0600

Beginner’s guide to comparative bacterial genome analysis using next-generation sequence data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630013/ #Bacteria #NGS #Comparative #Genomics

Wire post by Jit

Jit — Wed, 08 Nov 2017 12:05:57 -0600

Get the reads in fastq file: awk '{s++}END{print s/4}' file.fastq #reads #count #ngs #fastq

Wire post by Jit

Jit — Fri, 30 Jun 2017 07:16:30 -0500

Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern

Wire post by Jit

Jit — Wed, 31 May 2017 09:45:20 -0500

All about #newbler #assembly https://contig.wordpress.com/ #NGS

Wire post by Jit

Jit — Tue, 02 May 2017 09:34:11 -0500

Perl OneLiner http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/oneliners.html #Perl #Oneliner #NGS #Script

Wire post by Jit

Jit — Tue, 02 May 2017 09:05:00 -0500

NGS onliner http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/subsetFASTAFASTAQ.html #OneLiner #NGS

Wire post by Robert M Willioms

Robert M Willioms — Thu, 06 Apr 2017 12:22:37 -0500

Plotting nice coverage graph with R https://davetang.org/muse/2013/09/07/creating-a-coverage-plot-in-r/ #R #Plot #Coverage #NGS

Wire post by Neel

Neel — Fri, 31 Mar 2017 07:26:33 -0500

Ion Torrent white paper: https://tools.thermofisher.com/content/sfs/manuals/CO25176_0512.pdf #NGS #Ion #Torrent #Steps

Wire post by Abhimanyu Singh

Abhimanyu Singh — Tue, 07 Mar 2017 10:07:12 -0600

Assembly comparison https://github.com/WGLab/uniline/tree/master/src/assembly_comparison #NGS #Assembly #MUMMer

Wire post by Jit

Jit — Mon, 19 Dec 2016 07:19:15 -0600

NGS tutorial http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/linux.html #NGS #Tutorial #Example

Wire post by Hardeep Kaur

Hardeep Kaur — Mon, 21 Nov 2016 05:06:35 -0600

Genome and coverage https://rtsf.natsci.msu.edu/_rtsf/assets/File/depth%20and%20coverage.pdf #Coverage #Genome #Depth #Reads #NGS

Wire post by Shruti Paniwala

Shruti Paniwala — Tue, 25 Oct 2016 05:25:43 -0500

Coverage R Plot http://davetang.org/muse/2013/09/07/creating-a-coverage-plot-in-r/ #R #Plot #Genome #Image #NGS #BAM

Wire post by Archana Malhotra

Archana Malhotra — Fri, 19 Aug 2016 07:36:54 -0500

NGS exercise http://wiki.bits.vib.be/index.php/NGS_Exercise.5 #NGS #VIB #Training #Exercise