BOL: Wire posts tagged with 'number'

Wire post by Jit

Jit — Fri, 22 Jan 2021 08:10:55 -0600

sort the string which combined with string + numeric using bash script. $ sort -V #Sort #sort #number #string

Rahul Nayak — Thu, 20 Dec 2018 13:18:03 -0600

Add number in fasta header $ awk '/^>/{$0=$0"_"(++i)}1' infile.fa #fasta #header #add #number #count

Poonam Mahapatra — Wed, 29 Jun 2016 15:31:47 -0500

#Extract #Chromosome #Number And Start Position #Reads: samtools view bamfile.bam|awk '{print $3 "\t" $4 "\t" $4+length($10)-1}' > newfile.tab

Rahul Nayak — Wed, 09 Sep 2015 16:17:11 -0500

Count the number of sequences in fastaq file. grep -c '^@' sample1.fq #Fastaq #Count #Number #Grep #Dirty #Oneliner #NGS

Jit — Mon, 21 Jul 2014 06:37:42 -0500

To count number of fasta entries, I use: grep -c '^>' mySequences.fasta #Perl #Count #Number #Fasta #Linux #Grep

Jit — Wed, 11 Jun 2014 03:04:58 -0500

Count the number of "pattern" occurrence in a file grep -o 'pattern' anc.annots.gff | wc -l #Linux #grep #Count #Number #Occurrence

Jit — Tue, 10 Jun 2014 05:34:41 -0500

Count the total number of lines in a file. my $total=@{[]}; #Perl #Count #Number #Total #File