BOL: Wire posts tagged with 'sort'

Wire post by Jit

Jit — Fri, 22 Jan 2021 08:10:55 -0600

sort the string which combined with string + numeric using bash script. $ sort -V #Sort #sort #number #string

Wire post by Jit

Jit — Tue, 21 Jul 2020 12:45:07 -0500

Sort and get the best first of duplicated lines $ sort -k3rn file | sort -u -k1,1 #Sort #Duplicated #Value

Wire post by Hardeep Kaur

Hardeep Kaur — Fri, 20 Jul 2018 04:09:56 -0500

sort -k2 -n genome.fa #Sort #Column2 #Bash

Wire post by Jit

Jit — Thu, 09 Nov 2017 07:37:05 -0600

Sort a file with column 2: sort -g -k 2,2 allPacbio.fa.fai > sorted.fai #sort #file #column

Wire post by Jit

Jit — Mon, 27 Jun 2016 08:39:50 -0500

Check if BAM file is sorted or not use: for F in `find . -name "*.bam"`; do echo $F; samtools index ${F} ; done #Sort #BAM #Trick

Wire post by Rahul Nayak

Rahul Nayak — Thu, 13 Aug 2015 00:36:31 -0500

Sort FASTA sequence by length: cat f1.fasta| awk '{if($0 ~ /^>/){printf "%st", $0}else{print length($0)"t"$0}}'| sort -k2n,2| awk '{print $1"n"$3}' > sequence.fasta #Sort #Fasta #Trick #Onliner