BOL: Wire posts tagged with 'split'

Wire post by Neel

Neel — Mon, 25 Nov 2019 22:26:37 -0600

Multifasta 2 singlefasta cat toy.fasta| awk '{ if (substr($0, 1, 1)==">" {filename=(substr($0,2) ".fa")} print $0 > filename }' #Split #fasta #multifasta

Wire post by Rahul Nayak

Rahul Nayak — Tue, 15 Jan 2019 04:12:56 -0600

Split a multi-FASTA file into individual FASTA files: awk '/^>/{s=++d".fa"} {print > s}' multi.fa #split #multifasta

Wire post by Jit

Jit — Wed, 19 Dec 2018 03:58:11 -0600

#Split the #BAM file $ /home/urbe/Tools/bamtools/bin/bamtools split -in improved3.fasta.sorted.bam -reference #bamtools

Wire post by BioStar

BioStar — Wed, 26 Sep 2018 05:50:30 -0500

Split the fasta $ pyfasta split -k 100 -o 20 input.fasta -n 1 #split #pyfasta #overlaps

Wire post by Rahul Nayak

Rahul Nayak — Tue, 10 Apr 2018 04:06:14 -0500

#Split #multifasta $ cat hg18.fa | awk '{
if (substr($0, 1, 1)==">") {filename=(substr($0,2) ".fa")}
print $0 > filename
}'

Wire post by Jit

Jit — Wed, 05 Jul 2017 11:02:44 -0500

Split the file in Linux with size. $ split --bytes=50M aaaa.fa #split #linux #size

Wire post by Jit

Jit — Tue, 28 Feb 2017 09:07:34 -0600

Split the bam file by chromosome. $ bamtools split -in file.bam -reference #Split #Bam #Bamtools

Wire post by Shruti Paniwala

Shruti Paniwala — Wed, 26 Oct 2016 12:43:58 -0500

Slice on the fly with perl: my ($username, $real_name) = (split /:/, $str)[0, 4]; #Perl #PerlTrick #Split

Wire post by Jit

Jit — Fri, 23 Sep 2016 10:18:59 -0500

Split the text file with line number in Linux: wc -l abc.txt and then: split -l 60000 abc.txt #Split #Break #Line #Ubuntu #Linux #Tricks