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  • HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

http://nservant.github.io/HiC-Pro/

HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro supports the main Hi-C protocols, including digestion protocols as well as protocols that do not require restriction enzyme such as DNase Hi-C. In practice, HiC-Pro can be used to process dilution Hi-C, in situ Hi-C, DNase Hi-C, Micro-C, capture-C, capture Hi-C or HiChip data.

 

http://nservant.github.io/HiC-Pro/