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LEGE on Basic command-line to run BLAST (1247 days ago): Understanding the...- BioStar on How to install Perl modules manually, using CPAN command, and other quick ways (1265 days ago): If using conda conda create --name perlENV perlconda activate perlENV conda...
- BioStar on How to install Perl modules manually, using CPAN command, and other quick ways (1265 days ago): Installing in CONDA env You can check using which perl - it...
- BioStar on Calculate the significance of the difference between two trends (1267 days ago): Useful reading material https://statsandr.com/blog/anova-in-r/
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When Thousands of Bacterial Genomes Become One Giant Map
By LEGE 5 days agoDeveloped by Jérôme Arnoux and colleagues, PANORAMA is a computational tool designed to explore bacterial pangenomes—the complete collection of genetic possibilities found across a species or group of related organisms. Instead of looking at every...GIPSy2 Detect Hidden Islands Inside Bacteria
By BioStar 7 days agoResearchers developed GIPSy2, a computer tool that acts like a detective. It scans bacterial DNA and looks for unusual patterns that might show where a genomic island is hiding.Earth Biogenome Project - Reading the Book of Life
By Jitendra Narayan 9 days agoImagine a library containing the story of every living species on Earth. Millions of books, each written in a language we are only beginning to understand.Aurora: A New Detective for Bacterial Genomes
By BioStar 11 days agoThe bigger lesson is simple: better biological discoveries often begin with better data.From DNA Chaos to a Clear Microbial Story
By BioStar 11 days agoImagine opening a metagenomic dataset and finding millions of DNA fragments, each carrying a tiny piece of information about the microbial world inside a sample. The challenge is not generating the data — it is turning that data into a meaningful...The Ghost Ancestors Hidden in Our DNA
By Jitendra Narayan 13 days agoA fascinating new study published in Science (https://www.science.org/doi/10.1126/science.aef8874?) introduces a computational method called TRACE, which allows scientists to search modern human genomes for genetic traces of ancient populations that...PG2: Making Pangenome Graphs Easier to Understand
By Jitendra Narayan 14 days agoGenomics is moving beyond the traditional approach of studying DNA using a single reference genome. Today, researchers are increasingly using pangenomes, which represent genetic information from multiple genomes and capture a much broader range of...The Sweet Side of Human Evolution: Did Sugar Help Build the Human Brain?
By Jitendra Narayan 15 days agoThe Sweet Fuel That Helped Build the Human BrainThe Giant Who Walked Across Ancient Taiwan
By Jitendra Narayan 16 days agoWhat if one of the most mysterious humans in our evolutionary story was far bigger than we imagined?The Best Free Crash Course on Large Language Models (LLMs) I've Come Across
By Neel 28 days agoUsing an LLM and understanding how it actually works.
