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Libraries or management tools for high throughput sequencing data
Last updated 48 days ago by LEGEGATB Library. The Genome Analysis Toolbox with de-Bruijn graph. A large part of tools developed by the GenScale team are based on this library.These methods enable the analysis of data sets of any size on multi-core desktop...-
Bioinformatics Lecture Notes
Last updated 51 days ago by LEGEStudy Resources for ECM3413 - Bioinformatics Contents General Information Lecture Slides Past Exam Paper Continuous Assessments Suggested Reading List General Information This module runs in Semester 2. It is... -
Tools to access the quality of your assembled genome !
Last updated 104 days ago by LEGEFASTA VALIDATOR + SEQKIT RMDUP: FASTA validation GENOMETOOLS GT GFF3VALIDATOR: GFF3 validation ASSEMBLATHON STATS: Assembly statistics GENOMETOOLS GT STAT: Annotation statistics NCBI FCS ADAPTOR: Adaptor contamination pass/fail NCBI... -
Important Bioinformatics Tools !
Last updated 114 days ago by BioStar1. Ktrim: An extra-fast, accurate adapter trimmer for sequencing data. It processes FASTQ files from multiple lanes with minimal mismatching and over-trimming of adapters.2. BWA MEM: A reliable alignment tool (particularly for mapping ALT contigs... -
Mitochondrial genome assembly tools !
Last updated 442 days ago by AbhiMitochondrial genome assembly tools are specialized software and algorithms designed to accurately reconstruct the mitochondrial genome (mitogenome) from sequencing data, typically obtained through techniques like next-generation sequencing (NGS).... -
Steps to find all the repeats in the genome !
Last updated 448 days ago by NeelTo find repeats in a genome from 2 to 9 length using a Perl script, you can use the RepeatMasker tool with the "--length" option[0]. Here's a step-by-step guide: Install RepeatMasker: First, you need to install RepeatMasker on your system. You... -
Bioinformatics tools for genome assembly !
Last updated 486 days ago by BioStarThere are numerous genome assembly tools available, each with its strengths and weaknesses. Here is a list of some widely used genome assembly tools as of my last update in September 2021: SPAdes: An assembler specifically designed for... -
Tools for Geospatial data analysis !
Last updated 610 days ago by BioStarGeospatial data is becoming increasingly important in many fields, including urban planning, environmental science, public health, and more. These tools can help you work with data from a variety of sources, including satellite imagery, GPS data,... -
Type of SSR
Last updated 623 days ago by BioStarTypes of SSRs (simple sequence repeats), SSRs are short DNA sequences consisting of a tandem repeat of a few nucleotides, typically 2-6 nucleotides in length. There are different types of SSRs based on the length and pattern of the repeated... -
Read Simulators
Last updated 783 days ago by Abhi Comments (1)Short Read Simulators With the popularity of next-generation sequencing (NGS) technologies, many NGS read simulators have been developed. Currently, many of the popular short read simulators are designed to simulate reads mimicking many Illumina,...
