Results for "Analysis"


  • R Graphs !!

    The blog is a collection of script examples with example data and output plots. R produce excellent quality graphs for data analysis, science and business presentation, publications and other purposes. Self-help codes and examples are provided. Enjoy nice graphs !!

    Tags: Bioinformatics, Analysis, NGS, R, Graph, Plot, Stats

    407 days ago

  • Statistics and probability

    Topics Displaying and describing data Modeling distributions of data Describing relationships in quantitative data Designing studies Probability Random variables Sampling distributions Confidence intervals (one sample) Significance tests (one sample) Significance tests and confidence ...

    Tags: Bioinformatics, Analysis, Statistics, Probability

    403 days ago

  • Bookmarks Biostatistics materials and books

    Biostatistics did not spring fully formed from the brow of R. A. Fisher, but evolved over many years. This process is continuing, although it may not be obvious from the outside. It has been ten years since the first edition of this book appeared (and rather longer since it was begun). Over this ...

    Tags: Bioinformatics, Analysis, Biostatistics, Books, Materials

    403 days ago

  • Method in Comparative genomics !!

    We present methods for the automatic determination of genome correspondence. The algorithms enabled the automatic identification of orthologs for more than 90% of genes and intergenic regions across the four species despite the large number of duplicated genes in the yeast genome. The remaining a...

    Tags: Bioinformatics, Comparative genomics, Genomics, Chromosome, Analysis, Method, Evolution

    401 days ago

  • Bioistats Online course

    One of our primary focuses will be to develop an understanding of the various ways in which we can assign a probability to some chance event. We'll also learn the fundamental properties of probability, investigate how probability behaves, and learn how to calculate the probability of a ...

    Tags: Bioinformatics, Analysis, Biostatistics, Books, Materials

    401 days ago


    Background. Next-generation sequencing technologies are now producing multiple times the genome size in total reads from a single experiment. This is enough information to reconstruct at least some of the differences between the individual genome studied in the experiment and the reference genome...

    Tags: Bioinformatics, Analysis, Assembly, Genome, Reference, NGS, RECORD

    386 days ago

  • GoJS

    GoJS is a feature-rich JavaScript library for implementing custom interactive diagrams and complex visualizations across modern web browsers and platforms. GoJS makes constructing JavaScript diagrams of complex nodes, links, and groups easy with customizable templates and layouts. GoJS offers ma...

    Tags: Bioinformatics, Analysis, Graph, JavaScript, GoJS, Plot, HTML

    389 days ago

  • Spines

    Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data manipulation (mostly genomic sequences, alignments, variation etc.), as well as specialized tool sets for various a...

    Tags: Bioinformatics, Analysis, Alignment, Synteny, Spines

    383 days ago

  • EXCAVATOR2tool

    EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data to identify CNVs. EXCAVATOR2 enhances the identification of all genomic CNVs, both overlapping and non-overlapping targeted exons by integrating the analysis of In-targets and Off- ...

    Tags: Bioinformatics, Analysis, CNV, EXCAVATOR2, tool, NGS

    381 days ago

  • e-RGA: enhanced Reference Guided Assembly of Complex Genomes

    Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at an incredibly low cost compared to Sanger sequencing. Despite this, some old problems have become even more difficult, de novo assembly being on top of this list. Despite efforts to design tool...

    Tags: Bioinformatics, Analysis, NGS, e-RGA, Genome, Assemble

    362 days ago