Calculate some statistics for a DNA alignment with Perl
...Bio::AlignIO; use Bio::Align::DNAStatistics; my $stats = Bio::Align::DNAStatistics->new(); my $alignin = Bio::AlignIO->new(-format => 'emboss',...2640 days ago
Perl script to convert fastq to fasta file
...use strict; use warnings; use Bio::Factory::EMBOSS; my $usage = "perl $0 in...or die $usage; my $factory = Bio::Factory::EMBOSS->new; my $seqret = $factory...ram('seqret'); # $seqret is a Bio::Tools::Run::EMBOSSApplication object $seqret-...2242 days ago
1433 days ago