2574 days ago
2549 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs...in assembled genomes using mate pair information. It is able to close gaps left open b...2541 days ago
CABOG: Celera Assembler with Best Overlap Graph
...p;for the 2001 publication of the first draft human genome sequence. The software was released to the public domain in 2004. Its open source repository on Source Forge is an internet resource...2539 days ago
2533 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
...maticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easily and effectively. SIMBA also is open source tool, i.e., can be freely dow...2531 days ago
DIYA: a bacterial annotation pipeline for any genomics lab
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV http://gmod.org/wiki/Diya2493 days ago
2479 days ago
QuorUM: An Error Corrector for Illumina Reads
...e. QuorUM is distributed as an independent software package and as a module of the MaSuRCA assembly software. Both are available under the GPL open source license at http://www.ge...2361 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and...istic data and compared its performance with similar existing software and data source. Conclusion CHSMiner is...2351 days ago