Results for "Scaffoldings"



    LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Oxford Nanopore Technologies Ltd. It can be used to scaffold high-quality draft genome assemblies with any long sequences (eg. ONT reads, PacBio reads, another draft genomes, etc) Paper a...

    Tags: Bioinformatics, Analysis, NGS, LINK, Genome, Scaffoldings

    408 days ago


    SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at

    Tags: Bioinformatics, Assembly, Scaffoldings, NGS, SWALO

    382 days ago

  • ScaffMatch

    caffMatch is a novel scaffolding tool based on Maximum-Weight Matching able to produce high-quality scaffolds from NGS data (reads and contigs). The tool is written in Python 2.7. It also includes a bash script wrapper that calls aligner in case one needs to first map reads to contigs (instead of...

    Tags: Bioinformatics, Analysis, Assembly, Genome, NGS, ScaffMatch, Scaffoldings

    369 days ago

  • Finishing !!

    The process of finishing a genome and moving it from a draft stage (the result of sequencing and initial assembly) to a complete genome is typically a time and resource intensive task. The advent of new sequencing technologies has come with its own set of opportunities and pit...

    Tags: Finishing, NGS, Scaffoldings

    211 days ago