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FSA: Fast Statistical Alignment
...is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruc...2636 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...Gchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function which accounts for the distance between neighboring genes on...2624 days ago
2548 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...diverse information sources. GRASS offers a mixed-integer programming formulation of the contig scaffolding problem, which combines contig order, distance and orientation in a single o...2530 days ago
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2453 days ago