BOL: Question: Webserver for microbial ecological studies

Question: Question: Webserver for microbial ecological studies

Jitbiotech
3425 days ago

Question: Webserver for microbial ecological studies

Microbial ecology

Is there any online tool or webserver where I can use physiochemical data (pH, C, N etc) to check whether it's a factor in OTU distribution between sites?

Answers

Hi JitBiotech,

There are few website that can help in this regard. Please check out these websites for more detail.

http://bioserv.rpbs.univ-paris-diderot.fr/services/MTiOpenScreen/

ChemMine Web Tools is an online service for analyzing and clustering small molecules by structural similarities, physicochemical properties or custom data types.

http://chemmine.ucr.edu/

Other tools at http://www.vls3d.com/links/chemoinformatics/admet/admet-and-physchem-predictions-and-related-tools

Thanks

Jit 3424 days ago

Thank you very much for all the webtools. Although my job cannot be done with these servers, all these will be very useful for bioinformatics work.

— Jitbiotech 3424 days ago

Hi JitBiotech,
I am afraid, any server for physiochemical data to OTU distribution prediction is not known to me, but it seems interesting puzzle. If you have NGS data then QIIME, which is an open-source bioinformatics pipeline, can be useful for performing microbiome analysis using raw DNA sequencing data. QIIME is designed to take users from raw sequencing data generated on the Illumina or other platforms through publication quality graphics and statistics. This includes demultiplexing and quality filtering, OTU picking, taxonomic assignment, and phylogenetic reconstruction, and diversity analyses and visualizations.

More at http://qiime.org/

Thanks

Surabhi Chaudhary 3424 days ago

BOL

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Question: Question: Webserver for microbial ecological studies