BOL: Question: Is there any database other than GEO ncbi, ncbi src database to get exome data??

Question: Question: Is there any database other than GEO ncbi, ncbi src database to get exome data??

Nadia Baig
3178 days ago

Question: Is there any database other than GEO ncbi, ncbi src database to get exome data??

Iam searching for the exome data for an eye disease "Glaucoma" obtained by next generation sequencing platform but unfortunately i am not able to get that data. I have already searched ncbi SRC, GEO data sets of ncbi but no data is available. Is there any database other than these to get data in FASTQC format?? Or any article related to glaucoma where information about datasets is available.

thanks

Answers

Hi Nadia,

Did you have a look at http://evs.gs.washington.edu/EVS/ and http://www.1000genomes.org/data hope you will find exome of interest here.

Thanks

Archana Malhotra 3174 days ago

You can also look at http://exac.broadinstitute.org/ server for many exome dataset.

http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/dataset.cgi?study_id=phs000458.v1.p1&phv=196216&phd=&pha=&pht=3592&phvf=&phdf=&phaf=&phtf=&dssp=1&consent=&temp=1

Poonam Mahapatra 3174 days ago

BOL

Nadia Baig

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Question: Question: Is there any database other than GEO ncbi, ncbi src database to get exome data??