BOL

The following is a list of journals which accept submissions that are primarily about the software, and not necessarily on new algorithms or new science. There is an expectation that the use of the software will enable new research to be carried out. This list of journals is not exhaustive - if you know of others, please let me know.

• American Journal of Human Genetics
• Artificial Intelligence in Medicine
• Artificial Life
• Behaviour Research Methods [example]
• Bioinformatics (Application Notes)
• Bioinformatics and Biology Insights
• Biophysical Journal
• BMC Bioinformatics
• BMC Neuroscience [example]
• ​BMC Systems Biology
• BMC Source Code for Biology and Medicine
• Bone
• Computer Methods and Programs in Biomedicine [example]
• Current Protocols in Bioinformatics
• Database: The Journal of Biological Databases and Curation
• Ecography (Software Notes) [example]
• eLife (Tools and Resources) [example]
• Epidemiology
• Evolutionary Bioinformatics
• F1000 Research
• Frontiers in Neuroinformatics
• Gigascience
• ​Methods in Ecology and Evolution
• Nature Methods [example]
• Neurocomputing
• Neuroinformatics
• Nucleic Acids Research (special issues)
• PeerJ [example]
• PLoS Computational Biology: Software collection
• PLoS ONE
• Trends in Parasitology

libertas academia is an open peer review

You can directly write to the Publications Manager of PLoS Computational Biology(ploscompbiol@plos.org). Mostly, they intertain, an would love to hear suggestions for possible new articles sections. I am sure they will let you know how you script/pipeline/tool article may fit in.