Our Sponsors
Related items
SDA: Long-read sequence and assembly of segmental duplications
By Jit 2562 days agowww.nature.com - Segmental Duplication Assembler (SDA; https://github.com/mvollger/SDA) constructs graphs in which paralogous sequence variants define the nodes and long-read sequences provide attraction and repulsion edges, enabling the partition and assembly of...Miropeats: discovers regions of sequence similarity amongst any set of DNA sequences
By Poonam Mahapatra 2388 days agowww.littlest.co.uk - Miropeats discovers regions of sequence similarity amongst any set of DNA sequences and then presents this similarity information graphically. Sequence similarity searching is a very general tool that forms the basis of many different biological...RePS: Repeat-masked Phrap with scaffolding, a WGS sequence assembler
By Jit 2257 days agoftp.genomics.org.cn - RePS (Repeat-masked Phrap with scaffolding), a WGS sequence assembler, that explicitly identifies exact kmer repeats from the shotgun data and removes them prior to the assembly. The established software Phrap is used to compute meaningful error...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 2212 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...VICUNA: a software tool that enables consensus assembly of ultra-deep sequence derived from diverse...
By biogeek 2023 days agowww.broadinstitute.org - VICUNA is a de novo assembly program targeting populations with high mutation rates. It creates a single linear representation of the mixed population on which intra-host variants can be mapped. For clinical samples rich in...MMseqs2: ultra fast and sensitive sequence search and clustering suite
By Abhi 1616 days agogithub.com - MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version, via cygwin)...Termal: a fast and interactive terminal-based viewer for multiple sequence alignments
By LEGE 169 days agogithub.com - termal, a fast, interactive, terminal-based viewer for multiple sequence alignments (MSAs), designed for use on remote systems such as high-performance computing (HPC)...gggenomes: A grammar of graphics for comparative genomics
By Surabhi Chaudhary 1863 days agogithub.com - gggenomes is a versatile graphics package for comparative genomics. It extends the popular R visualization packageggplot2 by adding dedicated plot functions for genes, syntenic regions, etc. and verbs to manipulate the plot to, for example,...ICAR project RA position @ Institute of Bioinformatics (IOB) Bangalore
Applications are invited for the post of Research Associate (RA) in the ICAR project on "Lactation stress associated postpartum anestrus SNP array in buffaloes". We are looking for a motivated candidate for handling Next Generation sequencing data...Project Fellow at Indian Institute of Chemical Biology (IICB)
Advertisement No. : R&C/CD/427/2015 ,Vacancy Code: 4271501 Project Fellow Bioinformatics recruitment in Indian Institute of Chemical Biology (IICB) purely temporary Name of the Project: "Genomics and Informatics Solutions for...
