Priya Singh
A Bioinformatician !!!
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SimLoRD: A read simulator for third generation sequencing reads
By Aaryan Lokwani 2331 days agobitbucket.org - SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences SMRT error model. Reads are simulated from both strands of a provided or randomly generated reference sequence. The reference...Bioinformatician stuck in wet-lab
By Rahul Agarwal 3900 days ago Comments (1)biomickwatson.wordpress.com - This guide is aimed at pet bioinformaticians, and is meant to guide them towards better career development. 1. Make friends with local bioinformatics groups 2. Talk to your computing group 3. Obtain clear expectations 4. Rewrite your job...Rebaler: program for conducting reference-based assemblies using long reads.
By Jit 2304 days agogithub.com - Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making consensus sequences. I made Rebaler for bacterial genomes (specifically for the...Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
By Neel 2234 days agogithub.com - Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful...Science for Life Laboratory (SciLifeLab)-Sweden
Science for Life Laboratory (SciLifeLab) is a national center for molecular biosciences with focus on health and environmental research. The center combines frontline technical expertise with advanced knowledge of translational medicine and...FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
By Jit 1807 days agobioinfo.ut.ee - FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the...Filtlong: quality filtering tool for long reads
By Radha Agarkar 1701 days agogithub.com - Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the...Professor/Associate Professor/ Assistant Professor at Chettinad Academy of Research and Education
OPEN FACULTY POSITION Chettinad Academy of Research and Education (CARE) invites applications from eligible and translational research-oriented candidates to the posts of Professor/Associate Professor/ Assistant Professor Computational Biology,...mixtureS: a novel tool for bacterial strain reconstruction from reads
By BioStar 1601 days agowww.cs.ucf.edu - mixtureS that can de novo identify bacterial strains from shotgun reads of a clonal or metagenomic sample, without prior knowledge about the strains and their variations. Tested on 243 simulated datasets and 195 experimental datasets, mixtureS...The Minerva Research Group for Bioinformatics
The focus of the bioinformatics group is to use computational approaches to gain an insight into genome evolution in primates. http://www.eva.mpg.de/genetics/bioinformatics/overview.html?Fsize=0%2C%20%40%2F%27 Kelso Group Department of...
