Abhimanyu Singh
A bioinformatics beginner
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assemblytics: delta file to analyze alignments of an assembly to another assembly or a reference...
By Jit 2356 days agohttp://assemblytics.com/ - Download and install MUMmer Align your assembly to a reference genome using nucmer (from MUMmer package) $ nucmer -maxmatch -l 100 -c 500 REFERENCE.fa ASSEMBLY.fa -prefix OUT Consult the MUMmer manual if you encounter problems Optional: Gzip...Walk-in-Interview @ Indian Agricultural Statistics Research Institute
Indian Agricultural Statistics Research Institute Library Avenue, Pusa, New Delhi – 110012 Walk-in-Interview Walk-in-interview will be held on October 5, 2013 at 10:00 A.M. at IASRI, New Delhi for a project “A New Distributed Computing...
LINKS scaffolder bloomfilter setting !
Last updated 2355 days ago by Jit➜ bin git:(master) ✗ ls -l total 68 drwxrwxr-x 3 urbe urbe 4096 Jun 15 12:15 lib -rwxrwxrwx 1 urbe urbe 65141 Jun 15 17:13 LINKS ➜ bin git:(master) ✗ pwd /home/urbe/Tools/LINKS_1.8.6/bin ➜ bloomfilter git:(master) ✗ swig -Wall -c++...Shendure Lab
The Shendure Lab is part of the Department of Genome Sciences at the University of Washington (Seattle, WA). The mission of the lab is to develop and apply new technologies in genomics and molecular biology. Most projects in the lab exploit new DNA...Converting a VCF into a FASTA given some reference !
By Jit 2320 days agoconverting a VCF file into a FASTA file given a reference sequenceShankar Lab
Research Interest: (A) Regulatory System Analysis with respect to microRNAs (B) Computational Epigenomics & Regulomics: (C) Computational issues with Next Generation Sequencing: Department of Biotechnology, Institute of Himalyan...DbBrowser: Attwood Lab
DbBrowser: Attwood Lab research concerns protein sequence analysis, primarily using the method of protein 'fingerprinting'. DbBrowser: Attwood Lab maintain a diagnostic fingerprint database (PRINTS), one of the founding partner of InterPro. We also...Bioinformatics @ TATA MEMORIAL CENTRE, NAVI MUMBAI
TATA MEMORIAL CENTRE ADVANCED CENTRE FOR TREATMENT, RESEARCH AND EDUCATION IN CANCER KHARGHAR, NAVI MUMBAI – 410210 No. ACTREC/Advt./ 72 /2013 WALK IN INTERVIEW 1. JRF* Genome-wide RNAi screen with human pooled tyrosine kinase shRNA...Synima: a Synteny imaging tool for annotated genome assemblies
By Abhimanyu Singh 2218 days agogithub.com - Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included...Project Junior Research Fellow @ CCMB
Temporary Project positions available purely on temporary basis - Oct/2013 1. Project Junior Research Fellow / Project Assistant Last Date: 11th Nov 2013 Qualification B.Tech (Comp. Sci.), B.Tech/M.Tech (Bioinformatics), MCA, M.Sc....
