Abhimanyu Singh
A bioinformatics beginner
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Post-doc in Systems Genetics
Gagneur lab at Gene Center, Ludwig-Maximilians-Universitaet, Munich, Germany Deadline for applications : January 15, 2014. Description : We seek a talented and motivated post-doc to develop computational methods for inferring the molecular...PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
By BioStar 2033 days agogithub.com - PyParanoid is a pipeline for rapid identification of homologous gene families in a set of genomes - a central task of any comparative genomics analysis. The "gold standard" for identifying homologs is to use reciprocal best hits (RBHs) which depends...Computer experts in biotechnology laboratory
By Jit 4477 days ago Comments (3)Only bioinformatician can understand that multiplication and division are different but same thing :) Disclaimer: This cartoon is solely designed to create humour and fun, not to offend any computer experts.homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes
By Abhi 1008 days agogithub.com - This tutorial describes the usage of homologizer to phase gene copies into polyploid subgenomes. The tutorial is an abbreviated version of a soon-to-be published paper in Methods in Molecular Biology. Please see that paper for many more...
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
Last updated 4496 days ago by Manisha Mishra Comments (2)Hidden Markov Models, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : The CG island is a stretch of DNA (usually longer than 200 bases) in which the frequency of the CG sequence is higher than other regions. It is also called the CpG...Protein Subcellular Localization Prediction
By Poonam Mahapatra 2929 days agoabi.inf.uni-tuebingen.de - Assigning subcellular localization to a protein is an important step towards elucidating its interaction partners, function, and potential role(s) in the cellular machinery. Computational tools offer an attractive complement to time-consuming and...Molecular Bioinformatics Lab (MBL)
The main subject of interest in our laboratory is the study of the relationship among sequence, structure, and function in proteins and nucleic acids. Our research can be divided in two major topics: the study of the sequence-structure...STRUM: structure-based prediction of protein stability changes upon single-point mutation
By BioStar 2735 days agozhanglab.ccmb.med.umich.edu - STRUM is a method for predicting the fold stability change (ΔΔG) of protein molecules upon single-point nsSNP mutations. STRUM adopts a gradient boosting regression approch to train the Gibbs free-energy changes on a variety of features...Scientist Positions @ Gujarat State Biotechnology Mission
Gujarat State Biotechnology Mission invite applications [Online Only] under various projects* namely Gujarat Biodiversity Gene Bank (BioGene), Gujarat Institute of Genomics (GIG), Gujarat Institute of Bioinformatics [GIBS] and Gujarat Institute of...SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
By Robert M Willioms 3005 days agogithub.com - SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.
