Abhimanyu Singh
A bioinformatics beginner
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PANDASEQ
By Shruti Paniwala 3483 days agoneufeldserver.uwaterloo.ca - PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality information. If amplification primers were used (e.g., to isolate a variable...FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
By Jit 3448 days agokakitone.github.io - FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high...Multi-metagenome assembly
By Radha Agarkar 3444 days agogithub.com - This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomesMads...PhenoGram
By Jit 3440 days ago Comments (1)ritchielab.psu.edu - With PhenoGram researchers can create chomosomal ideograms annotated with lines in color at specific base-pair locations, or colored base-pair to base-pair regions, with or without other annotation. PhenoGram allows for annotation of chromosomal...Multigenome assembly
By Jit 3433 days agogithub.com - This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Mads...CABOG: Celera Assembler with Best Overlap Graph
By Abhimanyu Singh 3371 days agowww.jcvi.org - CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as large genomes such as...fragScaff: Genome Assembly with Contiguity Preserving Transposition
By Jit 3007 days agosourceforge.net - Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro means of generating libraries comprised of 9216 indexed pools, each of which contains thousands of sparsely sequenced long fragments ranging from 5 kilobases to...Bioinformatics Scientist, Production Bioinformatics @ South San Francisco, CA
wist is looking for a Bioinformatics Scientist to join our Production Bioinformatics Team. You will work alongside research scientists, software engineers and data scientists to further deliver on our mission to expand access to best-in-class...Amity University Bioinformatics Summer Program - Kolkata
By eliabrodsky 2614 days agoRegistrations are now open for the 2019 Summer Bioinformatics Training program at Amity University, Kolkata.Dynamic Programming Alignment
By Jitendra Narayan 4733 days agolecture 9, Chem. C100, Spring 2013, UCLA
