Abhimanyu Singh
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Shouji: a fast and efficient pre-alignment filter for sequence alignment
By Jit 1825 days agogithub.com - The ability to generate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures. In this work, we explore the use of hardware/software co-design and hardware acceleration...WALK-IN INTERVIEW @ JIPMER
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By Rahul Nayak 1415 days agowww.bioinformatics.nl - Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...JRF Bioinformatics at MANIT, India
Advt. No.: Maths./577/2016 Date: 12/08/2016 JRF Bioinformatics Job Position in Maulana Azad National Institute of Technology (MANIT) purely temporary basis Project Title : “Computational Approach to Study Complex Biological Network of Diseases...Seal: SEquence ALignment evaluation suite
By Jit 2495 days agocompbio.case.edu - Seal is a comprehensive sequencing simulation and alignment tool evaluation suite. This software (implemented in Java) provides several utilities that can be used to evaluate alignment algorithms, including: Reading a pre-existing reference...vcfR
By Archana Malhotra 2997 days agocran.r-project.org - Most variant calling pipelines result in files containing large quantities of variant information. The variant call format (vcf) is an increasingly popular format for this data. The format of these files and their content is discussed in...Unicycler: Hybrid assembly pipeline for bacterial genomes
By Jit 2549 days agogithub.com - Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs...Project Scientist at National Agri-Food Biotechnology Institute (NABI)
Advt. No. NABI/8(18)/2012-PME-3 Project Scientist recruitment in National Agri-Food Biotechnology Institute (NABI) Project Title : “Transfer and Evaluation of Indian Banana with Pro-Vitamin A (PVA) Constructs” Essential qualifications: Ph.D....
SPAdes hybrid genome assembly
Last updated 2532 days ago by Jit Comments (1)When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was used to produce the B fragilis assembly by Mick Watson’s group. Again, running spades.py will show you the...Useful Bioinformatics Tools
By Poonam Mahapatra 2987 days ago Comments (1)molbiol-tools.ca - Collections of few handy tools for bioinformatician http://molbiol-tools.ca/Convert.htm
