splitbam: splits a BAM by chromosomes
...chromosomes. Using the reference sequence dictionary (*.dict), it also creates some empty BAM files if no s...HROM__ and end with .bam -s assume input is sorted. -x | --index create index. -t | --tmp (dir) tmp...2666 days ago
2659 days ago
2585 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produc...2581 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...ap is also used as an overlapper in a new de novo genome assembly project called Ra (https://github.com/mariokostelac/ra-integrate).Ra attempts to create de novo assemblies from raw n...2568 days ago
2556 days ago
LRCstats: Long Read Correction Statistics
...erence genome (Ref) are given in some sort of alignment file and then aligning the corrected long reads (cLR) to the Ref-uLR two-way alignments to create three-way alignments using a...2356 days ago
karyoploteR: plot whole genomes with arbitrary data
karyoploteR is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted on them. It is inspired by the R base graphics system and...1994 days ago
2264 days ago
d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
... with JavaScript. The d3Network package makes it easy to create these network graphs from&nbs...th information about the relationships between members of a network and create full network graphs with one...2264 days ago