2652 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. Warning! This softw...2652 days ago
2651 days ago
GroopM: Metagenomic binning toolset
GroopM is a metagenomic binning toolset. It leverages spatio-temoraldynamics (differential covera...ly (and almost automatically)extract population genomes from multi-sample metagenomic datasets. GroopM is largely...2651 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and also to annotat...2631 days ago
2575 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...otgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce genomic, metagenomic, transcriptomic, metatranscri...2573 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...with its location in all the relevant full-length CAZyme proteins in all sequenced genomes; dbCAN provides the most complete set of metagenomic CAZyme genes published s...2568 days ago
Omega2: metagenome assembly pipeline
...ting overlap-layout-consensus assemblers. This indicates Omega can more efficiently assemble longer Illumina reads, and at deeper coverage, for metagenomic datasets.2526 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with compositional cl...2386 days ago